this is my code , I don't know how this comes, can you help me?
./PAINTOR -input input.files -in /data2/test1/XCY/fine_mapping/finemap/ -out /data2/test1/XCY/fine_mapping/finemap/ -Zhead ZSCORE -LDname ld -enumerate 3 -annotations DHS
Running PAINTOR with full enumeration
Maximum number of causals per locus: 3
Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95
Model annotations: DHS
Reading in files for: locus1
Error: Infinite/non-numeric value in LD matrix detected!!
Terminating Execution. Check ld matrix file: locus1.ld at index (0,42)
I use 1000g_eas to calculate LD , and get the LD matrix ,I don't know where is the problem
this is my code , I don't know how this comes, can you help me?
./PAINTOR -input input.files -in /data2/test1/XCY/fine_mapping/finemap/ -out /data2/test1/XCY/fine_mapping/finemap/ -Zhead ZSCORE -LDname ld -enumerate 3 -annotations DHS Running PAINTOR with full enumeration Maximum number of causals per locus: 3 Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95 Model annotations: DHS
Reading in files for: locus1 Error: Infinite/non-numeric value in LD matrix detected!! Terminating Execution. Check ld matrix file: locus1.ld at index (0,42)
I use 1000g_eas to calculate LD , and get the LD matrix ,I don't know where is the problem