Dear professor,
In my result file for one locus, the posterior probabilities of all SNPs are 1. Why is this? I checked the LD file and there are no NA values. Can you give me some guidance or suggestions?
And I also encountered the following problem:
./PAINTOR -input input -in SampleData -out sampletest -Zhead Zscore -LDname ld1,ld2 -annotations Coding,DHS -mcmc
Running PAINTOR in MCMC mode
Number of chains: 5
Samples per chain: 50000
Burn in: 5000
Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95
Model annotations: Coding DHS
Dear professor, In my result file for one locus, the posterior probabilities of all SNPs are 1. Why is this? I checked the LD file and there are no NA values. Can you give me some guidance or suggestions?
./PAINTOR -input input -in SampleData -out sampletest -Zhead Zscore -LDname ld1,ld2 -annotations Coding,DHS -mcmc Running PAINTOR in MCMC mode Number of chains: 5 Samples per chain: 50000 Burn in: 5000 Proportion of LD variance kept when performing truncated SVD for estimating N*h2g: 0.95 Model annotations: Coding DHS
Reading in files for: Locus1
Segmentation fault (core dumped)
How can I solve this problem?