Closed AlistairNWard closed 9 years ago
Completed. This is no longer handled by a specific request to generate multiple runs of gkno requiring a specific format json file. Simply adding multiple files to the command line will achieve this effect. For example, if aligning with bwa, supplying a file containing a list of the first mates, a file containing a list of second mates and lists of desired options will run bwa multiple times - once for each set of values.
Reimplement capability to handle user input of multiple sets of parameters, leading to multiple executions of the pipeline.