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gkno / gkno_launcher

The gkno launcher for executing tools or pipelines
MIT License
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Issue with "data type (unknown) for field 'description" #3

Closed CarlosBorroto closed 11 years ago

CarlosBorroto commented 11 years ago

Hi,

I ran into this issue after building gkno, no matter what I try to do I get:

$ ./gkno

===============================
  Boston College gkno package

  version: 0.69
  date:    April 2013
===============================

ERROR:   Malformed configuration file: concatenate-files.json

DETAILS: The data type (unknown) for field 'description' in tool 'concatenate-files' is
         inconsistent with that expected (string).  Please check the configuration file and
         remove/repair invalid fields.

================================================================================================
  TERMINATED: Errors found in running gkno.  See specific error messages above for resolution.
================================================================================================

I see issue #1 might be related, but I couldn't figured it out why is not working for me. I'm running CentOS 6.4 with python 2.6.6.

Thanks, Carlos

pezmaster31 commented 11 years ago

Hi Carlos, Al and I are looking into this. He's the main contact point on the config file end of things, but he's at a conference right now. So it may be a little longer before we get to the bottom of it.

Thanks for your patience, and thanks for all of your feedback.

pezmaster31 commented 11 years ago

Pushed a fix. Should be good to go. Feel free to re-open if the problem persists.

(And it was related to Issue #1 . Thanks for the pointer.)

CarlosBorroto commented 11 years ago

I can confirm this fixed for me.

Thanks!, Carlos

AlistairNWard commented 11 years ago

Great, I'm glad that got fixed. If you require any further assistance or help in running, improving or extending gkno to better achieve your needs, please don't hesitate to contact us directly and we will be happy to help out.

Alistair

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On May 10, 2013, at 10:16 AM, Carlos Borroto notifications@github.com wrote:

I can confirm this fixed for me.

Thanks!, Carlos

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