Open kspham opened 9 years ago
University of Utah gkno package
version: 1.61.0 date: January 2015
Hi Son,
This is indeed an error in the configuration file. I am working on a new release of gkno that will hopefully be out next week. This should make life simpler and I will make sure that this pipeline is working in the new release. I will announce the new release via our Twitter feed (@gknoProject). Please bug me if you don't see the release.
Al
On Thu, Feb 19, 2015 at 3:58 PM, Son Pham notifications@github.com wrote:
here is the used version of gkno
University of Utah gkno package
version: 1.61.0 date: January 2015 git commit: 6403861 https://github.com/gkno/gkno_launcher/commit/640386124c025095c87140376ff907e4f8850f82
— Reply to this email directly or view it on GitHub https://github.com/gkno/gkno_launcher/issues/37#issuecomment-75134531.
Thank you, Alistair!
It seems that the pipeline configuration of tangram is not correct?
Output:
ERROR: Invalid attribute in pipeline configuration file: help group
DETAILS: The configuration file for pipeline 'fastq-tangram' contains the general attribute 'help group'. This is an unrecognised attribute which is not permitted. The general attributes allowed in a pipeline configuration file are:
TERMINATED: Errors in configurationClass. See specific error messages above for resolution.