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gkno / gkno_launcher

The gkno launcher for executing tools or pipelines
MIT License
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Handle large number of files #55

Open AlistairNWard opened 9 years ago

AlistairNWard commented 9 years ago

If you call variants on the whole genome and use a region small enough (which doesn't have to be that small), the merge step will fail because there are too many arguments on the command line. Determine how many is too many for the shell in use and perhaps break the merge into a multi step process.

ekg commented 9 years ago

Or, use a file list.

On Thu, Jun 4, 2015 at 3:07 PM, Alistair Ward notifications@github.com wrote:

If you call variants on the whole genome and use a region small enough (which doesn't have to be that small), the merge step will fail because there are too many arguments on the command line. Determine how many is too many for the shell in use and perhaps break the merge into a multi step process.

— Reply to this email directly or view it on GitHub https://github.com/gkno/gkno_launcher/issues/55.