If a job creates temp files, these have a random string attached. If one job fails, rerunning the gkno command will have all new filenames based on the new random string and so all successfully created temp files will be ignored. Allow the user to define the random string, thus generating a new makefile that will recognise the existing temp files.
Test using freebayes pipeline with a region list where one region has end < start. This will guarantee a failure of a single temp job.
AlistairNWard
commented
8 years ago
If a job creates temp files, these have a random string attached. If one job fails, rerunning the gkno command will have all new filenames based on the new random string and so all successfully created temp files will be ignored. Allow the user to define the random string, thus generating a new makefile that will recognise the existing temp files.
Test using freebayes pipeline with a region list where one region has end < start. This will guarantee a failure of a single temp job.