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gks-anvil / vrs_anvil_toolkit

Extract clinical variant interpretations from VCF using GA4GH VRS IDs
MIT License
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bug/metric-errors-dict #68

Open quinnwai opened 8 months ago

quinnwai commented 8 months ago

when an error is written to the metrics file, it is not serialized into dict and so is formatted weirdly as a defaultdict:

error: !!python/object/apply:collections.defaultdict args:

  • !!python/name:vrs_anvil.annotator.recursive_defaultdict '' dictitems: Expected reference sequence A on GRCh38:chr19 at positions (54220998, 54220999) but found T: 1 Expected reference sequence A on GRCh38:chr19 at positions (54221653, 54221654) but found T: 1 Unable to parse data as gnomad variation: 1