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gl186 / SprintFinish

Sprint 2 and final assessment project for Group 1 (Module 3 PGCert Clinical Bioniformatics Intro to Programming)
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Module 4 VEP Annotations #3

Open gl186 opened 9 months ago

gl186 commented 9 months ago

Module 4 VEP annotation from Esembl

ayurahman commented 8 months ago

Module4 not fetching the right data highlighted by Linda yesterday

ayurahman commented 8 months ago

Module4 updated and now working to fetch the right VEP data from hg19 assembly

ayurahman commented 8 months ago

Customer just updated. Will now try and get the code to fetch data from both hg19 and hg38 assembly. Will create a pull request once succeded

gl186 commented 8 months ago

outcome of tutorial and team meeting: need to remove API code and leave python function only.

ayurahman commented 8 months ago

Already remove the API and push the latest module4_VEP_code_only.py and module4_VEP_final_w_logger.py to Team-4 branch. The main.py team can choose which ever module4 version that works for integration.

ayurahman commented 8 months ago

I will keep this open just incase Linda want to add her testing of module4 findings