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gladkia / igvR

An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
MIT License
42 stars 4 forks source link

Give access to .Rproj file #25

Closed vladimirobucina closed 1 year ago

vladimirobucina commented 1 year ago

Hi Paul, thank you very much for this package, I'm planning on using it to create IGV Shiny app. I wanted to ask you is it possible to give access to .Rproj file of the project, because it's more convenient to work that way? I can see it's not present on the repo. Maybe there is specific reason for that?

paul-shannon commented 1 year ago

Hi @vladimirobucina,

You might want to take a look at https://github.com/paul-shannon/igvShiny before embarking on a new igv shiny app. Contributions, bug reports, PRs, forks - all welcome

paul-shannon commented 1 year ago

Sorry, @vladimirobucina, there is no .Rproj file for the package. That's RStudio-specific, I believe, which I rarely uses.

Instead, you might want to study (and use) the makefile.

vladimirobucina commented 1 year ago

Hi @paul-shannon I'll have a look at igvShiny :) I think people are more used to using .Rproj file, because most of R developers use RStudio IDE, but thank you for your suggestion, makefile might be a better solution. I'll probably create few PRs in next few weeks.