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gladstone-institutes / MonkeyPipeline

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Tool and path #16

Open wmaguire-gladstone opened 5 years ago

wmaguire-gladstone commented 5 years ago

https://github.com/gladstone-institutes/MonkeyPipeline/blob/e010cd6b46c01d5b06b2f3c04d99e14d7a5b03b5/bananas_agw.pm#L92

This tool needs to be moved to our storage on wynton and path updated.

AlexanderPico commented 5 years ago

Does this custom installation require administrator rights in order to place it somewhere that is globally accessible? If yes, do you want to go for it? This is the download link to the correct software: http://www.vmatch.de/download.html

If not, then let us know where we should attempt to install it.

wmaguire-gladstone commented 5 years ago

We should attempt to install this in the /wynton/group/gladstone/third_party/ directory. Then make certain everyone's PATH variable includes it, or that it's called by it's full path.

I don't have administrator rights, if it needs to be a part of the image across all nodes we'll make a request to wynton_admin@ucsf.edu.

wmaguire-gladstone commented 5 years ago

I've gone ahead and setup vmatch under our Wynton storage, but I'm inclined to comment out this line all together.

This path doesn't exist in rigel; as shown below sthomas home dir was tar'd in August 2017.

[root@rigel-uv2k ~]# ll /home/sthomas/
total 4789964
-rw-r--r--. 1 root root 4904922173 Aug 30  2017 sthomas-tools-recovered.tgz