Seems that the following two test cases with simulated chems are broken: test_TopN_controller_with_simulated_chems and test_TopN_controller_with_simulated_chems_and_noise. I see MS2 scans are produced, but they're all empty (so not written to the mzML files).
Seems that the following two test cases with simulated chems are broken:
test_TopN_controller_with_simulated_chemsandtest_TopN_controller_with_simulated_chems_and_noise. I see MS2 scans are produced, but they're all empty (so not written to the mzML files).https://github.com/sdrogers/vimms/blob/master/tests/integration/test_controllers.py#L168-L213