Closed vinnydavies closed 2 years ago
in examples/01. vimms (Wandy et al 2019)/01. Download Data.ipynb
the function extract_roi
has moved to FeatureExtraction
file and should be loaded as:
from vimms.FeatureExtraction import extract_roi
in
examples/01. vimms (Wandy et al 2019)/01. Download Data.ipynb
the functionextract_roi
has moved toFeatureExtraction
file and should be loaded as:from vimms.FeatureExtraction import extract_roi
Thanks for noticing that @uliebal ! I've just fixed the notebooks.
If you're interested to run our project, the demo folder contain more examples to look at. There's also a number of test cases here that test the controllers and other classes in different scenarios. Feel free to raise an issue on this github if you have any question.
The DsDA example from the original ViMMS paper is broken /examples/01. vimms (Wandy et al 2019)/DsDA. The code appears to be severely out of date. The mass spec no longer takes the schedule file that DsDA needs to run, it also doesn't use
environment