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glee4810 / ehrsql-2024

Clinical NLP Shared Task @ NAACL'24
https://sites.google.com/view/ehrsql-2024
Creative Commons Attribution 4.0 International
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Cannot find 'cost' table in MIMIC-iv 2.2 version #1

Closed satyakesav closed 9 months ago

satyakesav commented 9 months ago

Hi,

I can't find the table named 'cost' (mentioned in the data/mimic_iv/tables.json file) in the MIMIC-IV dataset downloaded from here: https://physionet.org/content/mimiciv/2.2/

Can you please check if this is an issue?

glee4810 commented 9 months ago

You are correct. The original MIMIC-IV database does not have the cost table. To handle cost-related questions regarding EHR, the preprocessing code on this repo will create a synthetic cost table (OMOP CDM style).