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glencoesoftware / bioformats2raw

Bio-Formats image file format to raw format converter
GNU General Public License v2.0
77 stars 35 forks source link

Build using GitHub action #115

Closed jburel closed 2 years ago

jburel commented 3 years ago

Build using GitHub action This is the initial step to build using actions. Other change will be required to add support for repository dispatch (bf2raw is used in https://github.com/ome/ome_zarr_test_suite) This will be done in a follow up PR

cc @joshmoore

jburel commented 3 years ago

successful run https://github.com/jburel/bioformats2raw/actions/runs/1159466128

joshmoore commented 3 years ago

And events can propagate across organizations?

jburel commented 3 years ago

I have not tested that yet. I suspect it will, as long as PAT is set on the repo.

jburel commented 3 years ago

I tested using my account https://github.com/jburel/ome_zarr_test_suite/runs/3412494804. This was triggered from the fork of bf2raw

jburel commented 3 years ago

and the correct tests were run

test_suite.py::test[create-info] SKIPPED (skip set: True)                [  3%]
test_suite.py::test[create-downloads] SKIPPED (skip set: True)           [  7%]
test_suite.py::test[create-checksum] SKIPPED (skip set: True)            [ 10%]
test_suite.py::test[localfake1-info] SKIPPED (skip set: True)            [ 14%]
test_suite.py::test[localfake1-downloads] SKIPPED (skip set: True)       [ 17%]
test_suite.py::test[localfake1-checksum] SKIPPED (skip set: True)        [ 21%]
test_suite.py::test[localfake2-info] SKIPPED (skip set: True)            [ 25%]
test_suite.py::test[localfake2-downloads] SKIPPED (skip set: True)       [ 28%]
test_suite.py::test[localfake2-checksum] SKIPPED (skip set: True)        [ 32%]
test_suite.py::test[localfake3-info] SKIPPED (skip set: True)            [ 35%]
test_suite.py::test[localfake3-downloads] SKIPPED (skip set: True)       [ 39%]
test_suite.py::test[localfake3-checksum] SKIPPED (skip set: True)        [ 42%]
test_suite.py::test[remotefake1-info] SKIPPED (skip set: True)           [ 46%]
test_suite.py::test[remotefake1-downloads] SKIPPED (skip set: True)      [ 50%]
test_suite.py::test[remotefake1-checksum] SKIPPED (skip set: True)       [ 53%]
test_suite.py::test[remotefake2-info] SKIPPED (skip set: True)           [ 57%]
test_suite.py::test[remotefake2-downloads] SKIPPED (skip set: True)      [ 60%]
test_suite.py::test[remotefake2-checksum] SKIPPED (skip set: True)       [ 64%]
test_suite.py::test[idr6001240-info] SKIPPED (skip set: True)            [ 67%]
test_suite.py::test[idr6001240-downloads] SKIPPED (skip set: True)       [ 71%]
test_suite.py::test[idr6001240-checksum] SKIPPED (skip set: True)        [ 75%]
test_suite.py::test[bf2rawraw-info] PASSED                               [ 78%]
test_suite.py::test[bf2rawraw-downloads] PASSED                          [ 82%]
test_suite.py::test[bf2rawraw-checksum] PASSED                           [ 85%]
test_suite.py::test[bf2rawcompressed-info] PASSED                        [ 89%]
test_suite.py::test[bf2rawcompressed-downloads] PASSED                   [ 92%]
test_suite.py::test[bf2rawcompressed-checksum] PASSED                    [ 96%]
test_suite.py::test_all_scripts_used PASSED                              [100%]

Note that I did not modify the ome_zarr_test_suite to update the PR triggering the event (https://github.com/jburel/bioformats2raw/pull/1)