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glencoesoftware / bioformats2raw

Bio-Formats image file format to raw format converter
GNU General Public License v2.0
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don't add extra dimensions #209

Closed d-v-b closed 1 year ago

d-v-b commented 1 year ago

When I used this tool with a 3D tiff, the resulting zarr arrays had singleton T and C dimensions added. My data is a 3D segmentation image; it has no time axis, and it doesn't have channels. Would it be possible to either refrain from adding extra dimensions or provide a flag to disable this behavior?

melissalinkert commented 1 year ago

Transferred from NGFF-Converter to bioformats2raw, as NGFF-Converter uses bioformats2raw internally to perform conversion.

Closing as a duplicate of #180. As mentioned there, this isn't possible at the moment, and not something we're likely to implement soon. We'd be happy to look at a pull request if this is a high priority.