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glencoesoftware / bioformats2raw

Bio-Formats image file format to raw format converter
GNU General Public License v2.0
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Docker containers for new releases #243

Closed krokicki closed 8 months ago

krokicki commented 8 months ago

It looks like the latest Docker container is openmicroscopy/bioformats2raw:0.5.0 from over a year ago. Would it be possible to publish new releases as Docker containers? That would help enable usage of this software, e.g. in a Nextflow pipeline: https://github.com/BioinfoTongLI/to_ome_tif

jburel commented 8 months ago

@krokicki I have opened a PR to improve the generation of the Docker container

sbesson commented 8 months ago

Thanks @krokicki, this Docker image was developed by OME rather than Glencoe Software. At present, we have currently no plan to build & support Docker images for each bioformats2raw release. Closing this issue as I cannot transfer issues across organizations. As indicated by @jburel above, https://github.com/ome/bioformats2raw-docker is the repository containing the source of the Docker image and where this discussion should probably take place.

jburel commented 8 months ago

@krokicki A new version of the docker container is now available. It contains version 0.9.1 of bioformats2raw.

krokicki commented 8 months ago

Thanks so much, @jburel!