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glencoesoftware
/
raw2ometiff
Raw format to OME-TIFF converter
GNU General Public License v2.0
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Use HTTPS URL for senbox Nexus repository
#83
sbesson
closed
2 years ago
0
Preserve OMERO rendering metadata
#82
melissalinkert
closed
2 years ago
13
Allow OME Zarr group
#81
melissalinkert
closed
2 years ago
1
Add --split option
#80
melissalinkert
closed
1 year ago
15
Consider a mode to split series into individual TIF files
#79
DavidStirling
closed
1 year ago
3
Add note about `--quality` option
#78
melissalinkert
closed
2 years ago
4
--version throws a NullPointer Exception
#77
stick
closed
2 years ago
1
Only store OME-XML in the very first IFD
#76
melissalinkert
closed
2 years ago
0
Fix `--version`
#75
melissalinkert
closed
2 years ago
0
Update jna to 5.10.0 for arm64 support
#74
melissalinkert
closed
2 years ago
0
Copy Appveyor publishing settings from bioformats2raw
#73
melissalinkert
closed
2 years ago
0
Clarify that Java 8 is required
#72
melissalinkert
closed
2 years ago
0
Document that axes/transformations should be consistent with METADATA.ome.xml
#71
melissalinkert
closed
2 years ago
0
Lower resolution levels images to small
#70
JohanDore
closed
2 years ago
3
Feature/dockerfile
#69
ilveroluca
closed
1 year ago
2
Setting quality for JPEG compression
#68
xkacenga
closed
1 year ago
3
openslide cannot read pyramid-based tiff file that is converted from *.mrxs
#67
wanghan0501
closed
3 years ago
3
IllegalArgumentException in PyramidFromDirectoryWriter
#66
vladpopovici
closed
3 years ago
2
Handle symlink as the root directory (Fixes #62)
#65
chris-allan
closed
3 years ago
0
Proactively check the series count
#64
chris-allan
closed
3 years ago
0
Add debug logging around series detection
#63
melissalinkert
closed
3 years ago
0
broken pipeline bioformats2raw and raw2ometiff in 0.3.0-rc3?
#62
BioinfoTongLI
closed
3 years ago
21
Log each tile's location as it is written
#61
melissalinkert
closed
3 years ago
3
Emit (offset, length) information during generation
#60
joshmoore
closed
1 year ago
3
Fix progress bar max value when there are multiple planes
#59
melissalinkert
closed
3 years ago
1
Add test case for no HCS (See glencoesoftware/bioformats2raw#98)
#58
chris-allan
closed
3 years ago
0
Fix nested support and add test case
#57
chris-allan
closed
3 years ago
0
Update expected layout version from 2 to 3
#56
chris-allan
closed
3 years ago
0
Update expected layout version from 1 to 2
#55
melissalinkert
closed
3 years ago
0
Remove N5 references
#54
melissalinkert
closed
3 years ago
0
Use well row_index and column_index if available
#53
melissalinkert
closed
3 years ago
0
Remove data.zarr from expected hierarchy
#52
melissalinkert
closed
3 years ago
0
Cannot convert
#51
ozgurpolat
closed
3 years ago
2
Expect METADATA.ome.xml in data.zarr directory
#50
melissalinkert
closed
3 years ago
0
Large 3D volumes hang on RandomAccessFile.setLength
#49
joshmoore
closed
3 years ago
11
Resolution-based progress bars
#48
joshmoore
closed
3 years ago
1
Switch to jzarr
#47
melissalinkert
closed
3 years ago
0
Add --log-level option to set the specific logging level
#46
melissalinkert
closed
3 years ago
2
Initial OME Zarr HCS implementation
#45
melissalinkert
closed
3 years ago
1
First pass at basic refactoring
#44
melissalinkert
closed
3 years ago
0
--rgb option doesn't work with 3 channel image
#43
carlkesselman
closed
1 year ago
5
Temporarily disable open source artifactory
#42
melissalinkert
closed
4 years ago
0
Populate XResolution and YResolution TIFF tags
#41
melissalinkert
closed
4 years ago
0
Add --version option
#40
melissalinkert
closed
4 years ago
0
Fix sample format tag to preserve floating point pixel type
#39
melissalinkert
closed
4 years ago
0
query for version
#38
dsudar
closed
4 years ago
1
Add more "release" style documentation to README
#37
chris-allan
closed
4 years ago
0
Update n5, n5-zarr, and n5-blosc to match bioformats2raw
#36
melissalinkert
closed
4 years ago
0
Could not create an N5 reader
#35
Mohammedhusen
closed
4 years ago
2
Add --quality option to set the compression quality
#34
melissalinkert
closed
4 years ago
0
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