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glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
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Installation problem #119

Open francicco opened 4 years ago

francicco commented 4 years ago

Hi,

I'm trying to install ProgCactus following your instructions, unfortunately, the make gives me an error:

creating build/temp.linux-x86_64-2.7/psutil
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c psutil/_psutil_linux.c -o build/temp.linux-x86_64-2.7/psutil/_psutil_linux.o
psutil/_psutil_linux.c:11:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1
make[1]: *** [virtPyRule] Error 1
make[1]: Leaving directory `/mnt/storage/scratch/tk19812/software/progressiveCactus/submodules'
make: *** [all] Error 2

Could you help me solve it, please? Thanks a lot F

diekhans commented 4 years ago

please obtain progressive cactus from https://github.com/ComparativeGenomicsToolkit/cactus

Francesco Cicconardi notifications@github.com writes:

Hi,

I'm trying to install ProgCactus following your instructions, unfortunately, the make gives me an error:

creating build/temp.linux-x86_64-2.7/psutil
gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c psutil/_psutil_linux.c -o build/temp.linux-x86_64-2.7/psutil/_psutil_linux.o
psutil/_psutil_linux.c:11:20: fatal error: Python.h: No such file or directory
compilation terminated.
error: command 'gcc' failed with exit status 1
make[1]: *** [virtPyRule] Error 1
make[1]: Leaving directory `/mnt/storage/scratch/tk19812/software/progressiveCactus/submodules'
make: *** [all] Error 2

Could you help me solve it, please? Thanks a lot F

-- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/glennhickey/progressiveCactus/issues/119 Hi,

I'm trying to install ProgCactus following your instructions, unfortunately, the make gives me an error:

creating build/temp.linux-x86_64-2.7/psutil gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c psutil/_psutil_linux.c -o build/temp.linux-x86_64-2.7/psutil/_psutil_linux.o psutil/_psutil_linux.c:11:20: fatal error: Python.h: No such file or directory compilation terminated. error: command 'gcc' failed with exit status 1 make[1]: [virtPyRule] Error 1 make[1]: Leaving directory `/mnt/storage/scratch/tk19812/software/progressiveCactus/submodules' make: [all] Error 2

Could you help me solve it, please? Thanks a lot F

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