command not found

[vasilislenis]

I'm trying to run progressive cactus on a cluster for 21 genomes, but it gives me the following error message:

---

Beginning Alignment /bin/sh: cactus_createMultiCactusProject.py: command not found Error: Command: cactus_createMultiCactusProject.py /home/vasilis.lenis/expTemplate.xml /home/vasilis.lenis/progressiveAlignment --fixNames=0 exited with non-zero status 127

Temporary data was left in: /home/vasilis.lenis/ More information can be found in /home/vasilis.lenis/cactus.log

---

The problem is that there is no cactus.log file to check it Could you please tell me if this problem has to do with the data that I'm using or is an installation problem?

Thank you very much, Vasilis.

[benedictpaten]

Are you sure that you've followed the installation instructions correctly? It appears the binary hasn't been placed in the bin dir.

On Mon, Mar 3, 2014 at 4:51 PM, vasilislenis notifications@github.comwrote:

I'm trying to run progressive cactus on a cluster for 21 genomes, but it

gives me the following error message:

Beginning Alignment /bin/sh: cactus_createMultiCactusProject.py: command not found Error: Command: cactus_createMultiCactusProject.py /home/vasilis.lenis/expTemplate.xml /home/vasilis.lenis/progressiveAlignment --fixNames=0 exited with non-zero status 127

Temporary data was left in: /home/vasilis.lenis/

More information can be found in /home/vasilis.lenis/cactus.log

The problem is that there is no cactus.log file to check it Could you please tell me if this problem has to do with the data that I'm using or is an installation problem?

Thank you very much, Vasilis.

Reply to this email directly or view it on GitHubhttps://github.com/glennhickey/progressiveCactus/issues/12 .

[vasilislenis]

Thank you very much for your quick response.

I asked from the admin of the cluster that I'm working to install it (due to as a regular user I cannot connect to the web) and he assured me that the installation was perfect. So, do you believe that its an installation problem?

Vasilis.

On Mar 3, 2014, at 5:05 PM, Benedict Paten notifications@github.com wrote:

Are you sure that you've followed the installation instructions correctly? It appears the binary hasn't been placed in the bin dir.

On Mon, Mar 3, 2014 at 4:51 PM, vasilislenis notifications@github.comwrote:

I'm trying to run progressive cactus on a cluster for 21 genomes, but it

gives me the following error message:

Beginning Alignment /bin/sh: cactus_createMultiCactusProject.py: command not found Error: Command: cactus_createMultiCactusProject.py /home/vasilis.lenis/expTemplate.xml /home/vasilis.lenis/progressiveAlignment --fixNames=0 exited with non-zero status 127

Temporary data was left in: /home/vasilis.lenis/

More information can be found in /home/vasilis.lenis/cactus.log

The problem is that there is no cactus.log file to check it Could you please tell me if this problem has to do with the data that I'm using or is an installation problem?

Thank you very much, Vasilis.

Reply to this email directly or view it on GitHubhttps://github.com/glennhickey/progressiveCactus/issues/12 .

— Reply to this email directly or view it on GitHub.

[glennhickey]

yeah, looks like a build error to me too.

you can check for the missing file, it should be here if it was built correctly

ls submodules/cactus/bin/cactus_createMultiCactusProject.py

and also try re-running make to see where the error was.

On Mon, Mar 3, 2014 at 12:11 PM, vasilislenis notifications@github.comwrote:

Thank you very much for your quick response.

I asked from the admin of the cluster that I'm working to install it (due to as a regular user I cannot connect to the web) and he assured me that the installation was perfect. So, do you believe that its an installation problem?

Vasilis.

On Mar 3, 2014, at 5:05 PM, Benedict Paten notifications@github.com wrote:

Are you sure that you've followed the installation instructions correctly? It appears the binary hasn't been placed in the bin dir.

On Mon, Mar 3, 2014 at 4:51 PM, vasilislenis notifications@github.comwrote:

I'm trying to run progressive cactus on a cluster for 21 genomes, but it

gives me the following error message:

Beginning Alignment /bin/sh: cactus_createMultiCactusProject.py: command not found Error: Command: cactus_createMultiCactusProject.py /home/vasilis.lenis/expTemplate.xml /home/vasilis.lenis/progressiveAlignment --fixNames=0 exited with non-zero status 127

Temporary data was left in: /home/vasilis.lenis/

More information can be found in /home/vasilis.lenis/cactus.log

The problem is that there is no cactus.log file to check it Could you please tell me if this problem has to do with the data that I'm using or is an installation problem?

Thank you very much, Vasilis.

Reply to this email directly or view it on GitHub< https://github.com/glennhickey/progressiveCactus/issues/12> .

Reply to this email directly or view it on GitHub.

Reply to this email directly or view it on GitHubhttps://github.com/glennhickey/progressiveCactus/issues/12#issuecomment-36532854 .

[vasilislenis]

Thank you very much Glenn. unfortunately there is not the cactus_createMultiCactusProject.py file in the bin directory… I will re-run make, and I hope that it will be fixed… Vasilis.

On Mar 3, 2014, at 5:54 PM, Glenn Hickey notifications@github.com wrote:

yeah, looks like a build error to me too.

you can check for the missing file, it should be here if it was built correctly

ls submodules/cactus/bin/cactus_createMultiCactusProject.py

and also try re-running make to see where the error was.

On Mon, Mar 3, 2014 at 12:11 PM, vasilislenis notifications@github.comwrote:

Thank you very much for your quick response.

I asked from the admin of the cluster that I'm working to install it (due to as a regular user I cannot connect to the web) and he assured me that the installation was perfect. So, do you believe that its an installation problem?

Vasilis.

On Mar 3, 2014, at 5:05 PM, Benedict Paten notifications@github.com wrote:

Are you sure that you've followed the installation instructions correctly? It appears the binary hasn't been placed in the bin dir.

On Mon, Mar 3, 2014 at 4:51 PM, vasilislenis notifications@github.comwrote:

I'm trying to run progressive cactus on a cluster for 21 genomes, but it

gives me the following error message:

Beginning Alignment /bin/sh: cactus_createMultiCactusProject.py: command not found Error: Command: cactus_createMultiCactusProject.py /home/vasilis.lenis/expTemplate.xml /home/vasilis.lenis/progressiveAlignment --fixNames=0 exited with non-zero status 127

Temporary data was left in: /home/vasilis.lenis/

More information can be found in /home/vasilis.lenis/cactus.log

The problem is that there is no cactus.log file to check it Could you please tell me if this problem has to do with the data that I'm using or is an installation problem?

Thank you very much, Vasilis.

Reply to this email directly or view it on GitHub< https://github.com/glennhickey/progressiveCactus/issues/12> .

Reply to this email directly or view it on GitHub.

Reply to this email directly or view it on GitHubhttps://github.com/glennhickey/progressiveCactus/issues/12#issuecomment-36532854 .

— Reply to this email directly or view it on GitHub.