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glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
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progressive cactus doesn't support parallel make #20

Open diekhans opened 10 years ago

diekhans commented 10 years ago

64 cores available, one being used..

I can help fix this, but I need to know the order of the submodule build dependencies

glennhickey commented 10 years ago

That would be pretty awesome. Here are the dependencies, as far as I can tell:

a -> b (a is dependent on b)

(external tools) kyoto tycoon -> zlib; kyoto cabinet phast -> clapack

(our tools) All dependent on sonLib and jobTree and "virtpyenvrule". Other dependencies hal -> hdf5; phast cactus -> matchingAndOrdering; pinchesAndCacti; kyoto tycoon; kyoto cabinetl tokyo cabinet cactus2hal -> hal; cactus

The longest pacakges to build generally seem to be hdf5, the kyoto stuff, clapack, and hal.

thanks! -glenn