I've been trying to run progressiveCactus but I have the following error message;
[martin@login progressiveCactus]$ source environment
(python)[mjv08@bert progressiveCactus]$ ./bin/runProgressiveCactus.sh --help
Traceback (most recent call last):
File "./bin/../src/progressiveCactus.py", line 37, in
from sonLib.bioio import logger
File "/ibers/ernie/home/mjv08/software/progressiveCactus/submodules/sonLib/bioio.py", line 17, in
from argparse import ArgumentParser
ImportError: No module named argparse
From what I understand, there is a complete copy of python with all installed modules downloaded with progressiveCactus so the module should be there.
I'm trying to install this on our HPC cluster which runs Scientific Linux 6 and is the only system capable of running the analysis we wish to try and we meet the software requirements in your documentation.
[martin@login progressiveCactus]$ gcc --version
gcc (GCC) 4.4.6
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
[martin@login progressiveCactus]$ python --version
Python 2.7.5
I've been trying to run progressiveCactus but I have the following error message;
[martin@login progressiveCactus]$ source environment (python)[mjv08@bert progressiveCactus]$ ./bin/runProgressiveCactus.sh --help Traceback (most recent call last): File "./bin/../src/progressiveCactus.py", line 37, in
from sonLib.bioio import logger
File "/ibers/ernie/home/mjv08/software/progressiveCactus/submodules/sonLib/bioio.py", line 17, in
from argparse import ArgumentParser
ImportError: No module named argparse
From what I understand, there is a complete copy of python with all installed modules downloaded with progressiveCactus so the module should be there.
I'm trying to install this on our HPC cluster which runs Scientific Linux 6 and is the only system capable of running the analysis we wish to try and we meet the software requirements in your documentation.
[martin@login progressiveCactus]$ gcc --version gcc (GCC) 4.4.6 Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [martin@login progressiveCactus]$ python --version Python 2.7.5