Open mjfi2sb3 opened 8 years ago
I am getting the following error when I run halSnp
* glibc detected * halSnps: double free or corruption (fasttop): 0x00000000029a5fb0 *** ======= Backtrace: ========= /lib64/libc.so.6[0x3462875f4e] /lib64/libc.so.6[0x3462878cad] halSnps[0x471302] halSnps[0x46defd] halSnps[0x437fd1] halSnps[0x43ce56] halSnps[0x409867] /lib64/libc.so.6(__libc_start_main+0xfd)[0x346281ed5d] halSnps[0x4068c9] ======= Memory map: ======== 00400000-00725000 r-xp 00000000 00:37 225086 /data/snapdragon/bougous/packages/progressiveCactus/submodules/hal/bin/halSnps 00924000-00930000 rw-p 00324000 00:37 225086 /data/snapdragon/bougous/packages/progressiveCactus/submodules/hal/bin/halSnps 00930000-0094b000 rw-p 00000000 00:00 0 02407000-0600c000 rw-p 00000000 00:00 0 [heap] 32b9600000-32b9682000 r-xp 00000000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9682000-32b9881000 ---p 00082000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9881000-32b9882000 r--p 00081000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9882000-32b9883000 rw-p 00082000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 3462000000-3462020000 r-xp 00000000 00:10 339401 /lib64/ld-2.12.so 346221f000-3462220000 r--p 0001f000 00:10 339401 /lib64/ld-2.12.so 3462220000-3462221000 rw-p 00020000 00:10 339401 /lib64/ld-2.12.so 3462221000-3462222000 rw-p 00000000 00:00 0 3462800000-346298a000 r-xp 00000000 00:10 339406 /lib64/libc-2.12.so 346298a000-3462b8a000 ---p 0018a000 00:10 339406 /lib64/libc-2.12.so 3462b8a000-3462b8e000 r--p 0018a000 00:10 339406 /lib64/libc-2.12.so 3462b8e000-3462b8f000 rw-p 0018e000 00:10 339406 /lib64/libc-2.12.so 3462b8f000-3462b94000 rw-p 00000000 00:00 0 3462c00000-3462c17000 r-xp 00000000 00:10 339412 /lib64/libpthread-2.12.so 3462c17000-3462e17000 ---p 00017000 00:10 339412 /lib64/libpthread-2.12.so 3462e17000-3462e18000 r--p 00017000 00:10 339412 /lib64/libpthread-2.12.so 3462e18000-3462e19000 rw-p 00018000 00:10 339412 /lib64/libpthread-2.12.so 3462e19000-3462e1d000 rw-p 00000000 00:00 0 3463800000-3463807000 r-xp 00000000 00:10 339414 /lib64/librt-2.12.so 3463807000-3463a06000 ---p 00007000 00:10 339414 /lib64/librt-2.12.so 3463a06000-3463a07000 r--p 00006000 00:10 339414 /lib64/librt-2.12.so 3463a07000-3463a08000 rw-p 00007000 00:10 339414 /lib64/librt-2.12.so 3464c00000-3464c16000 r-xp 00000000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3464c16000-3464e15000 ---p 00016000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3464e15000-3464e16000 rw-p 00015000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3467000000-34670e8000 r-xp 00000000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34670e8000-34672e8000 ---p 000e8000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672e8000-34672ef000 r--p 000e8000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672ef000-34672f1000 rw-p 000ef000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672f1000-3467306000 rw-p 00000000 00:00 0 2b29ce930000-2b29ce931000 rw-p 00000000 00:00 0 2b29ce938000-2b29ce94e000 r-xp 00000000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ce94e000-2b29ceb4d000 ---p 00016000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ceb4d000-2b29ceb4e000 rw-p 00015000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ceb70000-2b29cebf8000 rw-p 00000000 00:00 0 2b29d0000000-2b29d0021000 rw-p 00000000 00:00 0 2b29d0021000-2b29d4000000 ---p 00000000 00:00 0 7fff6a7c8000-7fff6a7de000 rw-p 00000000 00:00 0 [stack] 7fff6a800000-7fff6a801000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
I am getting the following error when I run halSnp
* glibc detected * halSnps: double free or corruption (fasttop): 0x00000000029a5fb0 *** ======= Backtrace: ========= /lib64/libc.so.6[0x3462875f4e] /lib64/libc.so.6[0x3462878cad] halSnps[0x471302] halSnps[0x46defd] halSnps[0x437fd1] halSnps[0x43ce56] halSnps[0x409867] /lib64/libc.so.6(__libc_start_main+0xfd)[0x346281ed5d] halSnps[0x4068c9] ======= Memory map: ======== 00400000-00725000 r-xp 00000000 00:37 225086 /data/snapdragon/bougous/packages/progressiveCactus/submodules/hal/bin/halSnps 00924000-00930000 rw-p 00324000 00:37 225086 /data/snapdragon/bougous/packages/progressiveCactus/submodules/hal/bin/halSnps 00930000-0094b000 rw-p 00000000 00:00 0 02407000-0600c000 rw-p 00000000 00:00 0 [heap] 32b9600000-32b9682000 r-xp 00000000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9682000-32b9881000 ---p 00082000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9881000-32b9882000 r--p 00081000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 32b9882000-32b9883000 rw-p 00082000 00:33 14240698 /cbrc/software/anaconda/v2.1.0a.app/lib/libm-2.5.so 3462000000-3462020000 r-xp 00000000 00:10 339401 /lib64/ld-2.12.so 346221f000-3462220000 r--p 0001f000 00:10 339401 /lib64/ld-2.12.so 3462220000-3462221000 rw-p 00020000 00:10 339401 /lib64/ld-2.12.so 3462221000-3462222000 rw-p 00000000 00:00 0 3462800000-346298a000 r-xp 00000000 00:10 339406 /lib64/libc-2.12.so 346298a000-3462b8a000 ---p 0018a000 00:10 339406 /lib64/libc-2.12.so 3462b8a000-3462b8e000 r--p 0018a000 00:10 339406 /lib64/libc-2.12.so 3462b8e000-3462b8f000 rw-p 0018e000 00:10 339406 /lib64/libc-2.12.so 3462b8f000-3462b94000 rw-p 00000000 00:00 0 3462c00000-3462c17000 r-xp 00000000 00:10 339412 /lib64/libpthread-2.12.so 3462c17000-3462e17000 ---p 00017000 00:10 339412 /lib64/libpthread-2.12.so 3462e17000-3462e18000 r--p 00017000 00:10 339412 /lib64/libpthread-2.12.so 3462e18000-3462e19000 rw-p 00018000 00:10 339412 /lib64/libpthread-2.12.so 3462e19000-3462e1d000 rw-p 00000000 00:00 0 3463800000-3463807000 r-xp 00000000 00:10 339414 /lib64/librt-2.12.so 3463807000-3463a06000 ---p 00007000 00:10 339414 /lib64/librt-2.12.so 3463a06000-3463a07000 r--p 00006000 00:10 339414 /lib64/librt-2.12.so 3463a07000-3463a08000 rw-p 00007000 00:10 339414 /lib64/librt-2.12.so 3464c00000-3464c16000 r-xp 00000000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3464c16000-3464e15000 ---p 00016000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3464e15000-3464e16000 rw-p 00015000 00:10 339466 /lib64/libgcc_s-4.4.7-20120601.so.1 3467000000-34670e8000 r-xp 00000000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34670e8000-34672e8000 ---p 000e8000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672e8000-34672ef000 r--p 000e8000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672ef000-34672f1000 rw-p 000ef000 00:10 339468 /usr/lib64/libstdc++.so.6.0.13 34672f1000-3467306000 rw-p 00000000 00:00 0 2b29ce930000-2b29ce931000 rw-p 00000000 00:00 0 2b29ce938000-2b29ce94e000 r-xp 00000000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ce94e000-2b29ceb4d000 ---p 00016000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ceb4d000-2b29ceb4e000 rw-p 00015000 00:33 14250015 /cbrc/software/anaconda/v2.1.0a.app/lib/libz.so.1.2.8 2b29ceb70000-2b29cebf8000 rw-p 00000000 00:00 0 2b29d0000000-2b29d0021000 rw-p 00000000 00:00 0 2b29d0021000-2b29d4000000 ---p 00000000 00:00 0 7fff6a7c8000-7fff6a7de000 rw-p 00000000 00:00 0 [stack] 7fff6a800000-7fff6a801000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]