glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
Other
80 stars 26 forks source link

TypeError raised in exception report #75

Open rsharris opened 7 years ago

rsharris commented 7 years ago

This is not causing grief, but ...in cactus_progressive.py, line 115 attempts to raise a RunTimeError with an informative string, but the string format results in a TypeError (TypeError: %d format: a number is required, not str).

It's in ProgressiveUp.run(), using kyoto_tycoon and singleMachine, in the sanity check for having enough threads. No idea which of the four items is a string -- they all look like they would be ints. But the format string would work if all the %d were %s, since %s will accommodate any type.