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glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
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Alignment scores #79

Closed lydiasteiner closed 7 years ago

lydiasteiner commented 7 years ago

Hi,

does cactus generate alignment scores for each alignment block? And if so, how can I extract when generating a MAF file out of the HAL output?

joelarmstrong commented 7 years ago

Hi Lydia,

We don't currently generate alignment scores, sorry. We've gotten similar requests from a few people, so we'll consider adding that in a future release.

lydiasteiner commented 7 years ago

Thanks for the quick answer. Alignment scores or a tool to score the alignment blocks afterwards would be great.