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glennhickey / progressiveCactus

Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
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explicitly run with python2.7 #99

Open diekhans opened 6 years ago

diekhans commented 6 years ago

if a site has python 3 as the default, cactus will fail.

see #98

glennhickey commented 6 years ago

Is this what you have in mind?

https://github.com/ComparativeGenomicsToolkit/cactus/pull/23 https://github.com/ComparativeGenomicsToolkit/sonLib/pull/3

(with progressiveCactus to follow once these merged)

On Thu, Jan 4, 2018 at 7:14 PM, Mark Diekhans notifications@github.com wrote:

if a site has python 3 as the default, cactus will fail.

see #98 https://github.com/glennhickey/progressiveCactus/issues/98

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/glennhickey/progressiveCactus/issues/99, or mute the thread https://github.com/notifications/unsubscribe-auth/AA2_7v1wZBjyoRUjMnmDMuOOwNTAghxvks5tHWlhgaJpZM4RT4Gu .

glennhickey commented 6 years ago

@joelarmstrong https://github.com/glennhickey/progressiveCactus/commits?author=joelarmstrong Actually, can I use the cactus master branch in progressiveCactus, or do I need to base on the current commit (bdc04d09a98c8f9874f44f0730a99bf3a74356a8)?

On Fri, Jan 5, 2018 at 10:24 AM, Glenn Hickey glenn.hickey@gmail.com wrote:

Is this what you have in mind?

https://github.com/ComparativeGenomicsToolkit/cactus/pull/23 https://github.com/ComparativeGenomicsToolkit/sonLib/pull/3

(with progressiveCactus to follow once these merged)

On Thu, Jan 4, 2018 at 7:14 PM, Mark Diekhans notifications@github.com wrote:

if a site has python 3 as the default, cactus will fail.

see #98 https://github.com/glennhickey/progressiveCactus/issues/98

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/glennhickey/progressiveCactus/issues/99, or mute the thread https://github.com/notifications/unsubscribe-auth/AA2_7v1wZBjyoRUjMnmDMuOOwNTAghxvks5tHWlhgaJpZM4RT4Gu .