globalbioticinteractions / cas-ent

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suggest to generate link for California Academy of Sciences #2

Open jhpoelen opened 3 years ago

jhpoelen commented 3 years ago

Currently, California Academy of Sciences Entomology collection exposes the occurrence id via the darwin core occurrences table:

urn:catalog:CAS:ENT:9035102 2016-04-28 16:26:46.0 CAS ENT CAS PreservedSpecimen urn:catalog:CAS:ENT:9035102 9035102 deposited: CASC H. Wood 1 female 95% EtOH Agonis day collecting, hand collected in vegetation 2009-04-0999 2009 4 9 9 April 2009 Agonis coastal forest scrub on sand dunes, ~200 m from shore HW0023 Australia Western Australia Mutton Bird Point, West of Albany windfarm 30 35˚02'52.1"S, 117˚41'42.5"E -35.047806117.695139 Araneidae Simon, 1895 Araneidae Simon, 1895 id modified language institutionID collectionID datasetID institutionCode collectionCode ownerInstitutionCode basisOfRecord informationWithheld dataGeneralizations dynamicProperties occurrenceID catalogNumber occurrenceRemarks recordNumber recordedBy individualCount sex lifeStage reproductiveCondition behavior establishmentMeans preparations disposition otherCatalogNumbers associatedTaxa associatedOccurrences previousIdentifications eventID samplingProtocol samplingEffort eventDatestartDayOfYear endDayOfYear year month day verbatimEventDate habitat fieldNumber fieldNotes locationID waterBody country stateProvince county municipality locality verbatimElevation minimumElevationInMeters maximumElevationInMeters verbatimDepth minimumDepthInMeters maximumDepthInMeters locationRemarks verbatimCoordinates verbatimCoordinateSystem decimalLatitude decimalLongitude geodeticDatum coordinateUncertaintyInMeters coordinatePrecision footprintWKT georeferencedBy georeferenceProtocol georeferenceSources georeferenceVerificationStatus georeferenceRemarks identifiedBy dateIdentified identificationReferences identificationRemarks identificationQualifier typeStatus scientificName family genus specificEpithet infraspecificEpithet taxonRank scientificNameAuthorship taxonRemarks

If possible, create a link pointing to a search into the portal -

https://monarch.calacademy.org/collections/harvestparams.php

Screenshot from 2020-12-18 13-31-52

jhpoelen commented 1 year ago

Here's an example of an indexed specimen records:

image

with

image

and

https://monarch.calacademy.org/collections/list.php?catnum=CASENT9020510

being a likely candidate to link to specimen with a specific catalog number

jhpoelen commented 1 year ago

Now, whenever a CAS specimen is encountered and a catalognumber exists, a url with syntax:

https://monarch.calacademy.org/collections/list.php?catnum=[catalog number]

will be added. This will enable GloBI search results to link directly to monarch instance at CAS.