Closed jhpoelen closed 4 years ago
jhpoelen
commented
4 years ago export bibliographic information - Zotero RDF https://www.zotero.org/groups/2470546/plazi_coronavirus_virus-hosts_library/items/Z68PHNRC/library . This includes custom annotations.
jhpoelen
commented
4 years ago Here's a resulting rdf export -
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:z="http://www.zotero.org/namespaces/export#"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:bib="http://purl.org/net/biblio#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/">
<bib:Article rdf:about="#item_1">
<z:itemType>journalArticle</z:itemType>
<dcterms:isPartOf rdf:resource="urn:issn:1553-7374"/>
<bib:authors>
<rdf:Seq>
<rdf:li>
<foaf:Person>
<foaf:surname>Huang</foaf:surname>
<foaf:givenName>Canping</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Liu</foaf:surname>
<foaf:givenName>William J.</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Xu</foaf:surname>
<foaf:givenName>Wen</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Jin</foaf:surname>
<foaf:givenName>Tao</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Zhao</foaf:surname>
<foaf:givenName>Yingze</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Song</foaf:surname>
<foaf:givenName>Jingdong</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Shi</foaf:surname>
<foaf:givenName>Yi</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Ji</foaf:surname>
<foaf:givenName>Wei</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Jia</foaf:surname>
<foaf:givenName>Hao</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Zhou</foaf:surname>
<foaf:givenName>Yongming</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Wen</foaf:surname>
<foaf:givenName>Honghua</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Zhao</foaf:surname>
<foaf:givenName>Honglan</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Liu</foaf:surname>
<foaf:givenName>Huaxing</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Li</foaf:surname>
<foaf:givenName>Hong</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Wang</foaf:surname>
<foaf:givenName>Qihui</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Wu</foaf:surname>
<foaf:givenName>Ying</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Wang</foaf:surname>
<foaf:givenName>Liang</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Liu</foaf:surname>
<foaf:givenName>Di</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Liu</foaf:surname>
<foaf:givenName>Guang</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Yu</foaf:surname>
<foaf:givenName>Hongjie</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Holmes</foaf:surname>
<foaf:givenName>Edward C.</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Lu</foaf:surname>
<foaf:givenName>Lin</foaf:givenName>
</foaf:Person>
</rdf:li>
<rdf:li>
<foaf:Person>
<foaf:surname>Gao</foaf:surname>
<foaf:givenName>George F.</foaf:givenName>
</foaf:Person>
</rdf:li>
</rdf:Seq>
</bib:authors>
<dc:subject>Has Supplementary Material</dc:subject>
<dc:subject>dwc-host: {sciHost: Rousettus leschenaulti, verHost: bat}</dc:subject>
<dc:subject>dwc-host: {sciHost: Rousettus, verHost: bat}</dc:subject>
<dc:subject>dwc-host: {verHost: bat}</dc:subject>
<dc:subject>dwc-relationship: dwc-host: {sciHost: Rousettus leschenaulti, verHost: bat} dwc-virus: {sciVirus: Rousettus bat coronavirus GCCDC1, abVirus: Ro-BatCoV GCCDC1}</dc:subject>
<dc:subject>dwc-relationship: dwc-host: {sciHost: Rousettus, verHost: bat} dwc-virus: {sciVirus: Rousettus bat coronavirus HKU9, abVirus: Ro-BatCoV HKU9}</dc:subject>
<dc:subject>dwc-relationship: dwc-host: {verHost: bat} dwc-virus: {sciVirus: Middle East respiratory syndrome coronavirus, abVirus: MERS‐CoV}</dc:subject>
<dc:subject>dwc-relationship: dwc-host: {verHost: bat} dwc-virus: {sciVirus: severe acute respiratory syndrome coronavirus, abVirus: SARS-CoV}</dc:subject>
<dc:subject>dwc-virus: {sciVirus: Middle East respiratory syndrome coronavirus, abVirus: MERS‐CoV}</dc:subject>
<dc:subject>dwc-virus: {sciVirus: Rousettus bat coronavirus GCCDC1, abVirus: Ro-BatCoV GCCDC1}</dc:subject>
<dc:subject>dwc-virus: {sciVirus: Rousettus bat coronavirus HKU9, abVirus: Ro-BatCoV HKU9}</dc:subject>
<dc:subject>dwc-virus: {sciVirus: severe acute respiratory syndrome coronavirus, abVirus: SARS-CoV}</dc:subject>
<dc:title>A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene</dc:title>
<dcterms:abstract>The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of Rousettus leschenaulti bats by using pan-coronavirus RT-PCR and next-generation sequencing. Although the virus is similar to Rousettus bat coronavirus HKU9 (Ro-BatCoV HKU9) in genome characteristics, it is sufficiently distinct to be classified as a new species according to the criteria defined by the International Committee of Taxonomy of Viruses (ICTV). More striking was that Ro-BatCoV GCCDC1 contained a unique gene integrated into the 3'-end of the genome that has no homologs in any known coronavirus, but which sequence and phylogeny analyses indicated most likely originated from the p10 gene of a bat orthoreovirus. Subgenomic mRNA and cellular-level observations demonstrated that the p10 gene is functional and induces the formation of cell syncytia. Therefore, here we report a putative heterologous inter-family recombination event between a single-stranded, positive-sense RNA virus and a double-stranded segmented RNA virus, providing insights into the fundamental mechanisms of viral evolution.</dcterms:abstract>
<bib:pages>e1005883</bib:pages>
<dc:date>27 Sep 2016</dc:date>
<z:language>eng</z:language>
<z:libraryCatalog>PubMed</z:libraryCatalog>
<dc:description>PMID: 27676249
PMCID: PMC5038965</dc:description>
</bib:Article>
<bib:Journal rdf:about="urn:issn:1553-7374">
<dc:title>PLoS pathogens</dc:title>
<prism:volume>12</prism:volume>
<prism:number>9</prism:number>
<dcterms:alternative>PLoS Pathog.</dcterms:alternative>
<dc:identifier>DOI 10.1371/journal.ppat.1005883</dc:identifier>
<dc:identifier>ISSN 1553-7374</dc:identifier>
</bib:Journal>
</rdf:RDF>globalbioticinteractions/zenodo-metadata#1 established a connection between Plazi <> Zenodo <> GloBI. No need to integrate with Zotero at this point.
For GloBI to index annotated Zotero literature, we need machine readable access to Zotero.
fyi - @mguidoti @slint