jhpoelen
commented
3 years ago @seltmann thanks for sharing your suggestion.
I produced the following table with the mycoportal data generously provided by @stbates @thebateslab for indexing by GloBI. I believe the dataset was a temporary substitute while maintenance was being done. As you can see, basis of record was not (yet) included in this data file.
If you have ideas for a better source of mycoportal data, please do share.
via
$ curl -L "https://github.com/globalbioticinteractions/mycoportal/raw/main/tmp_host_info-20200902.csv.gz"\
| gunzip\
| head\
| mlr --icsv --omd catthe following markdown table was generated:
| occid | sciname | country | locality | substrate | host | associatedtaxa | catalogNumber | collid |
|---|---|---|---|---|---|---|---|---|
| 3042414 | United States | Populus balsamifera | CBRU00003514 | 54 | ||||
| 3043800 | Philippines | on N slope of Mt. Apo | Coleoptera: Staphylinidae | SYRF0007954 | 33 | |||
| 3043970 | RMS0004987 | 35 | ||||||
| 3044320 | RMS0005073 | 35 | ||||||
| 3050053 | RMS0005366 | 35 | ||||||
| 2854245 | United States | Greenhouse | Solanum tuberosum | CUP-029072 | 23 | |||
| 2854248 | United States | Pl. Path. Greenhouse | Lilium longiflorum giganteum | CUP-021618 | 23 | |||
| 2854252 | United States | potato tuber | Solanum tuberosum | CUP-029215 | 23 | |||
| 2854256 | Solanum tuberosum | CUP-012554 | 23 |
@jhpoelen Please consider updating the GloBI import to include a sourceBasisOfRecordName. Presently 1,278,142 records from mycoportal.org do not include BasisOfRecord information. This would be useful for understanding what records in GloBI are coming from PreservedSpecimens or HumanObservations. Thanks!