globalbioticinteractions / name-alignment-template

align names with known taxonomic resources
https://big-bee-network.github.io/name-alignment-workshop
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add way to visualize alignment across taxonomies #11

Open jhpoelen opened 1 year ago

jhpoelen commented 1 year ago

Currently, name alignments are published in tables. Tables are easy to process, but may be hard to interpret as a whole.

Idea is to create a visual representations graph (node-edge, network) ? to create some summary diagram to get a sense of how names align. This graph would help visually label names and how they relate (match, no match, partial match)

e.g., https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911943/

jhpoelen commented 1 year ago

example include via @ajacsherman and @n8upham

Pavan, A. C., Bobrowiec, P. E. D., & Percequillo, A. R. (2018). Geographic variation in a South American clade of mormoopid bats, Pteronotus (Phyllodia), with description of a new species. Journal of Mammalogy, 99(3), 624–645. https://doi.org/10.1093/jmammal/gyy048 Pavan, A. C., & Marroig, G. (2016). Integrating multiple evidences in taxonomy: Species diversity and phylogeny of mustached bats (Mormoopidae: Pteronotus). Molecular Phylogenetics and Evolution, 103, 184–198. https://doi.org/10.1016/j.ympev.2016.07.011 Pavan, A. C., & Marroig, G. (2017). Timing and patterns of diversification in the Neotropical bat genus Pteronotus (Mormoopidae). Molecular Phylogenetics and Evolution, 108, 61–69. https://doi.org/10.1016/j.ympev.2017.01.017

jhpoelen commented 1 year ago

and

DÁVALOS, L. M. (2006). The geography of diversification in the mormoopids (Chiroptera: Mormoopidae). Biological Journal of the Linnean Society, 88(1), 101–118. https://doi.org/10.1111/j.1095-8312.2006.00605.x