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maps identifiers and names to other identifiers and names
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nomer 0.4.3 IOException when try to use globi-taxon-rank #129

Closed zedomel closed 1 year ago

zedomel commented 1 year ago

Hi @jhpoelen

I'm trying to use globi-taxon-rank nomer's matcher (version 0.4.0) following the Makefile of taxon-graph-builder but it is producing the follow expcetion:

[main] INFO org.eol.globi.taxon.TaxonCacheService - local taxon cache of [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv] building...
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - using local Preston data dir: [/home/jose/.cache/nomer/data]
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv] at [/home/jose/.cache/nomer/tmp/nomer3632987002351868295.gz]...
java.io.IOException: problem retrieving [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv]
    at bio.guoda.preston.cmd.ContentQueryUtil.handleContentQuery(ContentQueryUtil.java:35)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:63)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:42)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:37)
    at org.globalbioticinteractions.nomer.match.ResourceServiceContentBased.retrieve(ResourceServiceContentBased.java:83)
    at org.globalbioticinteractions.nomer.match.ResourceServiceFactoryImpl$1.retrieve(ResourceServiceFactoryImpl.java:40)
    at org.globalbioticinteractions.nomer.match.TermMatcherContextCaching.retrieve(TermMatcherContextCaching.java:16)
    at org.eol.globi.service.CacheServiceUtil.createBufferedReader(CacheServiceUtil.java:13)
    at org.eol.globi.taxon.TaxonCacheService$3.<init>(TaxonCacheService.java:314)
    at org.eol.globi.taxon.TaxonCacheService.taxonCacheIterator(TaxonCacheService.java:313)
    at org.eol.globi.taxon.TaxonCacheService.initTaxonCache(TaxonCacheService.java:232)
    at org.eol.globi.taxon.TaxonCacheService.init(TaxonCacheService.java:158)
    at org.eol.globi.taxon.TaxonCacheService.lazyInit(TaxonCacheService.java:152)
    at org.eol.globi.taxon.TaxonCacheService.match(TaxonCacheService.java:262)
    at org.eol.globi.service.TermMatcherHierarchical.match(TermMatcherHierarchical.java:57)
    at org.globalbioticinteractions.nomer.util.AppendingRowHandler.onRow(AppendingRowHandler.java:36)
    at org.globalbioticinteractions.nomer.match.MatchUtil.apply(MatchUtil.java:85)
    at org.globalbioticinteractions.nomer.match.MatchUtil.match(MatchUtil.java:37)
    at org.globalbioticinteractions.nomer.cmd.CmdAppend.run(CmdAppend.java:20)
    at picocli.CommandLine.executeUserObject(CommandLine.java:1939)
    at picocli.CommandLine.access$1300(CommandLine.java:145)
    at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358)
    at picocli.CommandLine$RunLast.handle(CommandLine.java:2352)
    at picocli.CommandLine$RunLast.handle(CommandLine.java:2314)
    at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
    at picocli.CommandLine$RunLast.execute(CommandLine.java:2316)
    at picocli.CommandLine.execute(CommandLine.java:2078)
    at org.globalbioticinteractions.nomer.Nomer.run(Nomer.java:57)
    at org.globalbioticinteractions.nomer.Nomer.main(Nomer.java:46)
Caused by: java.io.IOException: [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv] not found.
    at bio.guoda.preston.cmd.ContentQueryUtil.handleContentQuery(ContentQueryUtil.java:31)
    ... 28 more
java.lang.RuntimeException: java.io.IOException: problem retrieving [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv]
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:45)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:37)
    at org.globalbioticinteractions.nomer.match.ResourceServiceContentBased.retrieve(ResourceServiceContentBased.java:83)
    at org.globalbioticinteractions.nomer.match.ResourceServiceFactoryImpl$1.retrieve(ResourceServiceFactoryImpl.java:40)
    at org.globalbioticinteractions.nomer.match.TermMatcherContextCaching.retrieve(TermMatcherContextCaching.java:16)
    at org.eol.globi.service.CacheServiceUtil.createBufferedReader(CacheServiceUtil.java:13)
    at org.eol.globi.taxon.TaxonCacheService$3.<init>(TaxonCacheService.java:314)
    at org.eol.globi.taxon.TaxonCacheService.taxonCacheIterator(TaxonCacheService.java:313)
    at org.eol.globi.taxon.TaxonCacheService.initTaxonCache(TaxonCacheService.java:232)
    at org.eol.globi.taxon.TaxonCacheService.init(TaxonCacheService.java:158)
    at org.eol.globi.taxon.TaxonCacheService.lazyInit(TaxonCacheService.java:152)
    at org.eol.globi.taxon.TaxonCacheService.match(TaxonCacheService.java:262)
    at org.eol.globi.service.TermMatcherHierarchical.match(TermMatcherHierarchical.java:57)
    at org.globalbioticinteractions.nomer.util.AppendingRowHandler.onRow(AppendingRowHandler.java:36)
    at org.globalbioticinteractions.nomer.match.MatchUtil.apply(MatchUtil.java:85)
    at org.globalbioticinteractions.nomer.match.MatchUtil.match(MatchUtil.java:37)
    at org.globalbioticinteractions.nomer.cmd.CmdAppend.run(CmdAppend.java:20)
    at picocli.CommandLine.executeUserObject(CommandLine.java:1939)
    at picocli.CommandLine.access$1300(CommandLine.java:145)
    at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358)
    at picocli.CommandLine$RunLast.handle(CommandLine.java:2352)
    at picocli.CommandLine$RunLast.handle(CommandLine.java:2314)
    at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
    at picocli.CommandLine$RunLast.execute(CommandLine.java:2316)
    at picocli.CommandLine.execute(CommandLine.java:2078)
    at org.globalbioticinteractions.nomer.Nomer.run(Nomer.java:57)
    at org.globalbioticinteractions.nomer.Nomer.main(Nomer.java:46)
Caused by: java.io.IOException: problem retrieving [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv]
    at bio.guoda.preston.cmd.ContentQueryUtil.handleContentQuery(ContentQueryUtil.java:35)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:63)
    at bio.guoda.preston.cmd.CmdGet.run(CmdGet.java:42)
    ... 26 more
Caused by: java.io.IOException: [file:/home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv] not found.
    at bio.guoda.preston.cmd.ContentQueryUtil.handleContentQuery(ContentQueryUtil.java:31)
    ... 28 more

The file /home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv exists: head -n5 /home/jose/.cache/nomer/wikidata_appended_taxon_ranks.tsv:

id  name    rank    commonNames path    pathIds pathNames   externalUrl thumbnailUrl
WD:Q6541077 subcohort       아구 @ko | أباشة @ar | падкагорта @be | subcohort @ca | podkohorta @cs | Unterkohorte @de | subcohort @en | subkohorto @eo | subcohorte @es | sous-cohorte @fr | fochohórt @ga | alraj @hu | subcohort @ia | upakohort @id | ქვეკოჰორტა @ka | subcohors @la | поткохорт @mk | sottokoort @mt | subcohort @nl | underkohort @nn | soscoòrta @oc | subcohortă @ro | подкогорта @ru | suttacoorti @scn | subcohorte @sco | аскоһорт @tt | аскоһорт @tt-cyrl | phân đoàn @vi | 亞群 @zh subcohort   WD:Q6541077     https://www.wikidata.org/wiki/Q6541077  
WD:Q6054237 magnorder       高目 @zh | رتبة ضخمة @ar | магнатрад @be | магнразред @bg | Magnorder @bn | magnordre @ca | velkořád @cs | Magnorden @da | Magnordnung @de | magnorder @en | magnorden @es | magnordena @eu | magnordre @fr | પ્રગૌત્ર @gu | rendcsoport @hu | magnordine @ia | Magnordine @it | 거목 @ko | Magnordo @la | магноред @mk | magnorder @nl | magnorden @nn | magnòrdre @oc | magnordin @ro | магнотряд @ru | magnòrdini @scn | magnorder @sco | магнтәртип @tt | магнтәртип @tt-cyrl | Magnórdene @vec | đại bộ @vi | میگن آرڈر @ur    magnorder   WD:Q6054237     https://www.wikidata.org/wiki/Q6054237  
WD:Q6054637 sublegion       فيلق ثانوي @ar | Падлегіён @be | sub legion @bs | sublegió @ca | podlegie @cs | Unterlegion @de | sublegion @en | sublegio @eo | sublegión @es | sous-légion @fr | foléigiún @ga | allégió @hu | sublegion @ia | upalegion @id | sublegio @la | подлегија @mk | sottoleġjun @mt | underlegion @nn | подлегион @ru | suttaleggioni @scn | sublegion @sco | аслегион @tt | аслегион @tt-cyrl | 亞部 @zh sublegion   WD:Q6054637     https://www.wikidata.org/wiki/Q6054637  
WD:Q22666877    superdomain     فوق النطاق @ar | супэрдамэн @be-tarask | надимперия @bg | superdomini @ca | υπερτομέας @el | superdomain @en | superdomain @en-gb | superdomanio @eo | superdominio @es | superdomeinu @eu | super-domaine @fr | forfhearann @ga | superdominio (taxonomía) @gl | મહાજાગીર @gu | superdominio @ia | superdomain @id | ზედომენი @ka | Supraregio @la | наддомен @mk | overdomene @nn | superdomínio @pt | superdomínio @pt-br | supradomeniu @ro | наддомен @ru | наддомен @sr | superdomän @sv | โดเมนใหญ่ @th | өсдомен @tt | өсдомен @tt-cyrl | ösdomen @tt-latn | مملکت اعلی @ur | 总域 @zh | 总域 @zh-cn | အထက် ဒိုမိန်း @my | superdomain @nia superdomain WD:Q22666877        https://www.wikidata.org/wiki/Q22666877

When I use nomer version 0.2.6 (prior to preston integration I presume) it works! Looks like the newer versions of nomer does not work with local files (or files not in remote preston graph ???)

I also tried to use nomer translate-names matcher with local file but it did not work (IOException):

nomer.taxon.name.correction.url=file:///home/jose/globi-gbif/taxon-name-mapping.csv

Could you help me with this?

Thanks.

jhpoelen commented 1 year ago

hey @zedomel - apologies for the bug . . . it appears that the wikidata resources have not yet been added (or incorrectly retrieve from) Nomer's Corpus of Taxonomic Resource.

A workaround may be to disable the preston integration by emptying their properties -

e.g., by default you have:

nomer properties | grep preston
nomer.preston.dir=
nomer.preston.remotes=https://zenodo.org/record/7196029/files
nomer.preston.version=hash://sha256/b3742bf43d9da0a8ed5522659199f47d68d31aaf46c90381190f324c1ac143f2

and if you use your own properties file with:

nomer.preston.dir=
nomer.preston.remotes=
nomer.preston.version=

the resources are retrieved from an unversioned copy, just like what nomer did prior to the Preston integration.

Please let me know if this workaround helps you more forward.

Meanwhile, I'll try and find the root of the issue and make globi-taxon-rank work in the Prestonocene.

jhpoelen commented 1 year ago

In preparing a new release of Nomer to address this globi-taxon-rank issue, I was able to generate:

$ echo -e "\tsoort" | nomer append --properties my.properties globi-taxon-rank
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D] at [/home/jorrit/.cache/nomer/ace0cedb0aa2a691e55c45bdc95dda068d4a8bb1b4086decc3f2803987984fd3.gz]
    soort   SAME_AS WD:Q7432    species         specie @it | loài @vi | espècia @oc | druh @cs | art @sv | art @nn | šlaajâ @smn | šlaajj @sms | tür @tr | Espesye @war | இனம் @ta | spesies @id | Aart @lb | 種 @ja | 种 @zh | 种 @zh-hans | 種 @zh-hant | espècie @ca | art @nb | Зүйл @mn | jinsi @ha | laji @fi | especie @gl | Тĕс @cv | вид @bg | specie @ro | ପ୍ରଜାତି @or | намуд @tg | Specie @rup | სახეობა @ka | Druh @sk | Spesie @af | Especie @an | نوع (بيولوجيا) @ary | প্ৰজাতি @as | especie @ast | Bioloji növ @az | Төр @ba | spésiés @ban | Oart @bar | Species @bcl | біялагічны від @be | प्रजाति @bho | প্রজাতি @bn | Spesad @br | Биологин тайпа @ce | ᏧᎾᏓᎴᎿ ᎠᏁᎯ @chr | جۆرە @ckb | spezia @co | tür @crh | rhywogaeth @cy | tewro biyolocik @diq | Družyna (biologija) @dsb | प्रजाति @dty | είδος @el | species @en-ca | liik @et | espezie @eu | Especii @ext | Slach @frr | soarte @fy | Lèspès @gcr | Juehegua @gn | જાતિ @gu | Species @hif | vrsta @hr | družina @hsb | Espès @ht | faj @hu | specie @ia | sebbangan @ilo | Биологен кеп @inh | Spiishi @jam | jutsi @jbo | spesies @jv | talmest @kab | Түр @kk | Биология тюрлю @krc | زٲژ @ks | Cure @ku | Түр @ky | Spéce @lmo | ແອສະແປດ @lo | Rūšis @lt | suga @lv | momo @mi | вид @mk | ജീവജാതി @ml | spesies @ms | سڤيسيس @ms-arab | speċi @mt | မျိုးစိတ် @my | تی @mzn | Chéng (hun-lūi-ha̍k) @nan | Specia @nap | Oort (Biologie) @nds | Soort @nds-nl | प्रजाति @ne | प्रजाति @new | ਪ੍ਰਜਾਤੀ @pa | soort @nl | specio @eo | species @la | گونه @fa | art @da | 종 @ko | gatunek @pl | від @be-tarask | вид @uk | Tur @uz | जाति @hi | ಜಾತಿ @kn | espèce @fr | Vrsta @sh | species @en | Art @de | نوع @ar | Art @de-ch | Art @gsw | speiceas @ga | Tegund @is | вид @ru | ߛߌߦߊ @nqo | species @en-gb | տեսակ @hy | espécie @pt | מין @he | especie @es | Espesye @pam | Spece @pms | توکمونه @ps | espécie @pt-br | Rikch'aq @qu | Вид @rue | Көрүҥ @sah | specia @scn | species @sco | šládja @se | විශේෂය @si | Nuucyada dhirta @so | Lloji @sq | врста @sr | Spésiés @su | Spishi @sw | జాతి @te | намуд @tg-cyrl | namud @tg-latn | สปีชีส์ @th | Biologik görnüş @tk | Espesye @tl | төр @tt | төр @tt-cyrl | tör @tt-latn | نوع @ur | Spece @vec | erik @vep | Sôorte @vls | Indje @wa | 物种 @wuu | გვარობა @xmf | זגאל @yi | 物種 @yue | 物种 @zh-cn | 物種 @zh-tw | vrsta @sl | species @dag | Tawsit @shi | نوع @arz | Eghen @kw | 物種 @zh-hk | vrsta @bs | espesie @pap | especie @pap-aw | spèiseas @gd | Rūšės @sgs | cor @ku-latn | پرجاتی @pnb   species WD:Q7432    https://www.wikidata.org/wiki/Q7432

with my.properties

nomer.preston.dir=
nomer.preston.remotes=
nomer.preston.version=
jhpoelen commented 1 year ago

on upgrading nomer to use Nomer Corpus of Taxonomic Resource v0.8,

Poelen, Jorrit H. (2022). Nomer Corpus of Taxonomic Resources hash://sha256/a0b5570204881a594cf0cca0d4b50c0ddca6f91c2086541516138a400620fb5b hash://md5/d05224a5c2933cd16f092ad28549f3e2 (0.8) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7343032

the following result was obtained:

$ echo -e "\tsoort" | nomer append globi-taxon-rank
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - using local Preston data dir: [/home/jorrit/.cache/nomer/data]
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D] at [/home/jorrit/.cache/nomer/tmp/nomer9488616572787809862.gz]...
[https://zenodo.org/recor...086541516138a400620fb5b] 100.0% of 6 kB at 1.19 MB/s completed in < 1 minute
[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 5.6% of 840 kB at 0.23 MB/s[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 11.3% of 840 kB at 0.23 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 17.0% of 840 kB at 0.34 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 22.7% of 840 kB at 0.30 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 28.4% of 840 kB at 0.29 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 34.2% of 840 kB at 0.34 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 39.9% of 840 kB at 0.32 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 45.6% of 840 kB at 0.31 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 51.3% of 840 kB at 0.30 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 57.0% of 840 kB at 0.33 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 62.7% of 840 kB at 0.31 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 68.4% of 840 kB at 0.29 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 74.2% of 840 kB at 0.28 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 79.9% of 840 kB at 0.30 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 85.6% of 840 kB at 0.30 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 91.3% of 840 kB at 0.31 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 97.0% of 840 kB at 0.31 MB/[https://zenodo.org/recor...df104d4ba88a54972f9f49e] 100.0% of 840 kB at 0.32 MB/s completed in < 1 minute
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D] at [/home/jorrit/.cache/nomer/tmp/nomer9488616572787809862.gz] done.
[main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://query.wikidata.org/sparql?format=json&query=PREFIX%20rdfs:%20%3Chttp://www.w3.org/2000/01/rdf-schema%23%3E%0APREFIX%20bd:%20%3Chttp://www.bigdata.com/rdf%23%3E%0APREFIX%20wd:%20%3Chttp://www.wikidata.org/entity/%3E%0APREFIX%20wikibase:%20%3Chttp://wikiba.se/ontology%23%3E%0APREFIX%20wdt:%20%3Chttp://www.wikidata.org/prop/direct/%3E%0ASELECT%20?i%20?l%20WHERE%20%7B%0A%20%20?i%20wdt:P31%20wd:Q427626.%0A%20%20?i%20rdfs:label%20?l%0A%7D] at [/home/jorrit/.cache/nomer/hash/sha256/a0b5570204881a594cf0cca0d4b50c0ddca6f91c2086541516138a400620fb5b/ace0cedb0aa2a691e55c45bdc95dda068d4a8bb1b4086decc3f2803987984fd3.gz]
[main] INFO org.eol.globi.taxon.TaxonCacheService - local taxon cache of [file:/home/jorrit/.cache/nomer/wikidata_appended_taxon_ranks.tsv] building...
[main] INFO org.eol.globi.taxon.TaxonCacheService - cache with [107] items built in [0.0] s or [4863.6] items/s.
[main] INFO org.eol.globi.taxon.TaxonCacheService - local taxon cache of [file:/home/jorrit/.cache/nomer/wikidata_appended_taxon_ranks.tsv] built.
[main] INFO org.eol.globi.taxon.TaxonCacheService - local taxon map of [file:/home/jorrit/.cache/nomer/wikidata_appended_taxon_rank_links.tsv] building...
[main] INFO org.eol.globi.taxon.TaxonCacheService - cache with [4019] items built in [0.2] s or [26440.8] items/s.
[main] INFO org.eol.globi.taxon.TaxonCacheService - local taxon map of [file:/home/jorrit/.cache/nomer/wikidata_appended_taxon_rank_links.tsv] built.
    soort   SAME_AS WD:Q7432    species         specie @it | loài @vi | espècia @oc | druh @cs | art @sv | art @nn | šlaajâ @smn | šlaajj @sms | tür @tr | Espesye @war | இனம் @ta | spesies @id | Aart @lb | 種 @ja | 种 @zh | 种 @zh-hans | 種 @zh-hant | espècie @ca | art @nb | Зүйл @mn | jinsi @ha | laji @fi | especie @gl | Тĕс @cv | вид @bg | specie @ro | ପ୍ରଜାତି @or | намуд @tg | Specie @rup | სახეობა @ka | Druh @sk | Spesie @af | Especie @an | نوع (بيولوجيا) @ary | প্ৰজাতি @as | especie @ast | Bioloji növ @az | Төр @ba | spésiés @ban | Oart @bar | Species @bcl | біялагічны від @be | प्रजाति @bho | প্রজাতি @bn | Spesad @br | Биологин тайпа @ce | ᏧᎾᏓᎴᎿ ᎠᏁᎯ @chr | جۆرە @ckb | spezia @co | tür @crh | rhywogaeth @cy | tewro biyolocik @diq | Družyna (biologija) @dsb | प्रजाति @dty | είδος @el | species @en-ca | liik @et | espezie @eu | Especii @ext | Slach @frr | soarte @fy | Lèspès @gcr | Juehegua @gn | જાતિ @gu | Species @hif | vrsta @hr | družina @hsb | Espès @ht | faj @hu | specie @ia | sebbangan @ilo | Биологен кеп @inh | Spiishi @jam | jutsi @jbo | spesies @jv | talmest @kab | Түр @kk | Биология тюрлю @krc | زٲژ @ks | Cure @ku | Түр @ky | Spéce @lmo | ແອສະແປດ @lo | Rūšis @lt | suga @lv | momo @mi | вид @mk | ജീവജാതി @ml | spesies @ms | سڤيسيس @ms-arab | speċi @mt | မျိုးစိတ် @my | تی @mzn | Chéng (hun-lūi-ha̍k) @nan | Specia @nap | Oort (Biologie) @nds | Soort @nds-nl | प्रजाति @ne | प्रजाति @new | ਪ੍ਰਜਾਤੀ @pa | soort @nl | specio @eo | species @la | گونه @fa | art @da | 종 @ko | gatunek @pl | від @be-tarask | вид @uk | Tur @uz | जाति @hi | ಜಾತಿ @kn | espèce @fr | Vrsta @sh | species @en | Art @de | نوع @ar | Art @de-ch | Art @gsw | speiceas @ga | Tegund @is | вид @ru | ߛߌߦߊ @nqo | species @en-gb | տեսակ @hy | espécie @pt | מין @he | especie @es | Espesye @pam | Spece @pms | توکمونه @ps | espécie @pt-br | Rikch'aq @qu | Вид @rue | Көрүҥ @sah | specia @scn | species @sco | šládja @se | විශේෂය @si | Nuucyada dhirta @so | Lloji @sq | врста @sr | Spésiés @su | Spishi @sw | జాతి @te | намуд @tg-cyrl | namud @tg-latn | สปีชีส์ @th | Biologik görnüş @tk | Espesye @tl | төр @tt | төр @tt-cyrl | tör @tt-latn | نوع @ur | Spece @vec | erik @vep | Sôorte @vls | Indje @wa | 物种 @wuu | გვარობა @xmf | זגאל @yi | 物種 @yue | 物种 @zh-cn | 物種 @zh-tw | vrsta @sl | species @dag | Tawsit @shi | نوع @arz | Eghen @kw | 物種 @zh-hk | vrsta @bs | espesie @pap | especie @pap-aw | spèiseas @gd | Rūšės @sgs | cor @ku-latn | پرجاتی @pnb   species WD:Q7432    https://www.wikidata.org/wiki/Q7432
jhpoelen commented 1 year ago

issue appears to be resolved in Nomer v0.4.5 .

@zedomel if issues remain, please do comment or open a new issue.