globalbioticinteractions / nomer

maps identifiers and names to other identifiers and names
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include authorship in ITIS/GBIF index #130

Closed jhpoelen closed 1 year ago

jhpoelen commented 1 year ago

currently:

echo -e "\tHomo sapiens"\
 | nomer append gbif --include-header 
providedExternalId providedName relationName resolvedExternalId resolvedName resolvedAuthorship resolvedRank resolvedCommonNames resolvedPath resolvedPathIds resolvedPathNames resolvedPathAuthorships resolvedExternalUrl
Homo sapiens SAME_AS GBIF:2436436 Homo sapiens species Animalia | Chordata | Mammalia | Primates | Hominidae | Homo | Homo sapiens GBIF:1 | GBIF:44 | GBIF:359 | GBIF:798 | GBIF:5483 | GBIF:2436435 | GBIF:2436436 kingdom | phylum | class | order | family | genus | species http://www.gbif.org/species/2436436

expected to have authorship field populated with Linnaeus, 1758 . . .

image

jhpoelen commented 1 year ago

with Nomer v0.4.6, ITIS/GBIF now includes authorship

echo -e "\tHomo sapiens" | nomer append gbif --include-header
providedExternalId providedName relationName resolvedExternalId resolvedName resolvedAuthorship resolvedRank resolvedCommonNames resolvedPath resolvedPathIds resolvedPathNames resolvedPathAuthorships resolvedExternalUrl
Homo sapiens HAS_ACCEPTED_NAME GBIF:2436436 Homo sapiens Linnaeus, 1758 species Animalia | Chordata | Mammalia | Primates | Hominidae | Homo | Homo sapiens GBIF:1 | GBIF:44 | GBIF:359 | GBIF:798 | GBIF:5483 | GBIF:2436435 | GBIF:2436436 kingdom | phylum | class | order | family | genus | species http://www.gbif.org/species/2436436

and

echo -e "\tHomo sapiens" | nomer append itis --include-header
providedExternalId providedName relationName resolvedExternalId resolvedName resolvedAuthorship resolvedRank resolvedCommonNames resolvedPath resolvedPathIds resolvedPathNames resolvedPathAuthorships resolvedExternalUrl
Homo sapiens HAS_ACCEPTED_NAME ITIS:180092 Homo sapiens Linnaeus, 1758 species Animalia | Bilateria | Deuterostomia | Chordata | Vertebrata | Gnathostomata | Tetrapoda | Mammalia | Theria | Eutheria | Primates | Haplorrhini | Simiiformes | Hominoidea | Hominidae | Homininae | Homo | Homo sapiens ITIS:202423 | ITIS:914154 | ITIS:914156 | ITIS:158852 | ITIS:331030 | ITIS:914179 | ITIS:914181 | ITIS:179913 | ITIS:179916 | ITIS:179925 | ITIS:180089 | ITIS:943773 | ITIS:943778 | ITIS:943782 | ITIS:180090 | ITIS:943805 | ITIS:180091 | ITIS:180092 kingdom | subkingdom | infrakingdom | phylum | subphylum | infraphylum | superclass | class | subclass | infraclass | order | suborder | infraorder | superfamily | family | subfamily | genus | species http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=180092