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globalbioticinteractions / nomer

maps identifiers and names to other identifiers and names
GNU General Public License v3.0
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add support to resolve OpenBiodiv taxon names #24

Closed jhpoelen closed 4 years ago

jhpoelen commented 4 years ago

Pensoft maintains OpenBiodiv, a biodiversity graph. In this graph, taxonomic names and associated hierarchies exist.

Suggest to add support to resolve taxonomic hierarchies of taxonomic identifiers known to OpenBiodiv .

Related issue https://github.com/globalbioticinteractions/globalbioticinteractions/issues/481 .

jhpoelen commented 4 years ago

Proposed functionality would look something like:

$ echo -e "http://openbiodiv.net/4B689A17-2541-4F5F-A896-6F0C2EEA3FB4" | nomer append openbiodiv 
http://openbiodiv.net/4B689A17-2541-4F5F-A896-6F0C2EEA3FB4  SAME_AS http://openbiodiv.net/4B689A17-2541-4F5F-A896-6F0C2EEA3FB4  Acanthaceae family      Plantae | Tracheophyta | Magnoliopsida | Lamiales | Acanthaceae     kingdom | phylum | class | order | family   http://openbiodiv.net/4B689A17-2541-4F5F-A896-6F0C2EEA3FB4
jhpoelen commented 4 years ago

First pass at OpenBiodiv term matching made available in Nomer v0.1.18 .