globalbioticinteractions / nomer

maps identifiers and names to other identifiers and names
GNU General Public License v3.0
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option --include-header no longer available in 0.2.12 #79

Closed jhpoelen closed 2 years ago

jhpoelen commented 2 years ago

from https://github.com/globalbioticinteractions/unhc/runs/6132501279?check_suite_focus=true#step:5:161 - with nomer version 0.2.12

Unknown option: '--include-header'
Usage: nomer append [-p=<propertiesResource>] [<matchers>...]
Append term match to row using id and name columns specified in input schema.
Multiple matches result in multiple rows.
      [<matchers>...]   [matcher]
  -p, --properties=<propertiesResource>
                        Path to properties file to override defaults.
uniq: write error: Broken pipe
jhpoelen commented 2 years ago

upgrading to v0.2.13 helped resolve the issue -

https://github.com/globalbioticinteractions/unhc/runs/6136008997?check_suite_focus=true#step:5:77

and documentation now includes the --include-header option again -

$ nomer help append
Usage: nomer append [--with-header] [-o=<outputFormat>]
                    [-p=<propertiesResource>] [<matchers>...]
Append term match to row using id and name columns specified in input schema.
Multiple matches result in multiple rows.
      [<matchers>...]   [matcher]
  -o, --output-format=<outputFormat>
                        tsv, json
  -p, --properties=<propertiesResource>
                        Path to properties file to override defaults.
      --with-header, --include-header
                        include table header