Closed jhpoelen closed 2 years ago
suggested by JT and @seltmann as most commonly preferred plant catalog.
Some summary statistics of World of Fauna Online look promising - especially because the licensing is CC0.
$ wget http://104.198.143.165/files/WFO_Backbone/_WFOCompleteBackbone/WFO_Backbone.zip
$ unzip -p WFO_Backbone.zip classification.txt | mlr --tsvlite cut -f taxonomicStatus | sort | uniq -c | sort -nr
827578 SYNONYM
444571 ACCEPTED
112380 UNCHECKED
40473 DOUBTFUL
55 HETEROTYPICSYNONYM
4 HOMOTYPICSYNONYM
1 taxonomicStatus
hey @Daniel-Mietchen - I am trying to add support in GloBI for https://www.wikidata.org/wiki/Property:P7715 (World of Flora Online) for @seltmann and friends.
However, for some reason, the Datatype is not marked as an identifier for taxa like https://www.wikidata.org/wiki/Property:P815 .
Can you please help to turn https://www.wikidata.org/wiki/Property:P7715 into an instance of https://www.wikidata.org/wiki/Q42396390 ?
For some reason, I cannot edit this property.
Nomer v0.2.14 https://github.com/globalbioticinteractions/nomer/releases/tag/0.2.14 is now able to do things like:
echo -e "\tQuercus" | nomer append wfo
[main] INFO org.globalbioticinteractions.nomer.match.TermMatcherRegistry - using matcher [wfo]
[main] INFO org.globalbioticinteractions.nomer.match.WorldOfFloraOnlineTaxonService - [WORLD_OF_FLORA_ONLINE] taxonomy already indexed at [/media/jorrit/branta/nomer/world_of_flora_online/world_of_flora_online], no need to import.
Quercus HAS_ACCEPTED_NAME WFO:4000032377 Quercus genus Fagales | Fagaceae | Quercus WFO:9000000208 | WFO:7000000231 | WFO:4000032377 order | family | genus http://www.worldfloraonline.org/taxon/wfo-4000032377
also,
$ nomer ls wfo | head -n2
[main] INFO org.globalbioticinteractions.nomer.match.TermMatcherRegistry - using matcher [wfo]
[main] INFO org.globalbioticinteractions.nomer.match.WorldOfFloraOnlineTaxonService - [WORLD_OF_FLORA_ONLINE] taxonomy already indexed at [/media/jorrit/branta/nomer/world_of_flora_online/world_of_flora_online], no need to import.
WFO:0000000001 Cirsium caput-medusae SYNONYM_OF WFO:0000027702 Cirsium spinosissimum species Asterales | Asteraceae | Cirsium | Cirsium spinosissimum WFO:9000000038 | WFO:7000000146 | WFO:4000008373 | WFO:0000027702 order | family | genus | species http://www.worldfloraonline.org/taxon/wfo-0000027702
WFO:0000000002 Aster persaliens HAS_ACCEPTED_NAME WFO:0000000002 Aster persaliens species Asterales | Asteraceae | Aster | Aster persaliens WFO:9000000038 | WFO:7000000146 | WFO:4000003381 | WFO:0000000002 order | family | genus | species http://www.worldfloraonline.org/taxon/wfo-0000000002
@seltmann please confirm that the behavior is as expected.
@jtmiller28 @seltmann initial support for world of flora online has been in use for a while. If you have additional feature requests for WFO, or find suspicious behavior, please open a new issue.
http://www.worldfloraonline.org/