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globalbioticinteractions / refuted-biotic-interactions-by-eol

Biotic interaction data that failed Encyclopedia of Life data validation
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suggest to add EOL's validation rule reference citation/doi to refuted dataset records. #1

Open jhpoelen opened 4 years ago

jhpoelen commented 4 years ago

Right now, a refutation data record provided by EOL references the dataset from which a refuted record came.

For instance, a record describing Andrena imitatrix's (a bee) flowers visited by something currently is:

argumentTypeName argumentReasonID argumentReasonName interactionTypeId interactionTypeName referenceCitation sourceCitation sourceArchiveURI sourceTaxonId sourceTaxonName sourceTaxonRank sourceTaxonKingdomName targetTaxonId targetTaxonName targetTaxonRank targetTaxonKingdomName
refute EOL-GloBI-validation7 Records of organisms other than plants having flower visitors are probably errors http://purl.obolibrary.org/obo/RO_0002623 has flowers visited by Seltmann, Katja C. 2020. Biotic species interactions about bees (Anthophila) manually extracted from literature.. Accessed at https://github.com/Extended-Bee-Network/bee-interaction-database/archive/7aadc58b8ee258e2faa4488e0b9ffb0340563684.zip on 10 Aug 2020. Biotic interaction data that failed Encyclopedia of Life data validation https://github.com/globalbioticinteractions/refuted-biotic-interactions-by-eol/blob/master/interactions.tsv EOL:1046642 Andrena imitatrix species Animalia GBIF:3251867 Grossularia genus Animalia

Suggest to replace the reference citation Seltmann, Katja C. 2020. Biotic species interactions about bees (Anthophila) manually extracted from literature.. Accessed at <https://github.com/Extended-Bee-Network/bee-interaction-database/archive/7aadc58b8ee258e2faa4488e0b9ffb0340563684.zip> on 10 Aug 2020. with a reference to the validation rule that helped generate the refutation record.

An example of such a reference could be:

Katja Schulz. 2020. Records of organisms other than plants having flower visitors are probably errors

Ideally, a url and/or doi would be included to help link the citation to a resource that help provide more information about the rule. Perhaps each rule could be published as a Zenodo publication.

Expressed in a table, this proposed change would look something like:

argumentTypeId argumentTypeName interactionTypeId interactionTypeName referenceDoi referenceCitation sourceCitation sourceArchiveURI sourceTaxonId sourceTaxonName sourceTaxonRank sourceTaxonKingdomName targetTaxonId targetTaxonName targetTaxonRank targetTaxonKingdomName
https://en.wiktionary.org/wiki/refute refute http://purl.obolibrary.org/obo/RO_0002623 has flowers visited by 10.123/456 Katja Schulz. 2020. Records of organisms other than plants having flower visitors are probably errors. Zenodo. doi:10.123/456 Biotic interaction data that failed Encyclopedia of Life data validation https://github.com/globalbioticinteractions/refuted-biotic-interactions-by-eol/blob/master/interactions.tsv EOL:1046642 Andrena imitatrix species Animalia GBIF:3251867 Grossularia genus Animalia

@KatjaSchulz this issue documents a proposal to reference EOL's rule citation as discussed today.