jhpoelen
commented
1 year ago @seltmann Thanks for sharing.
Just re-enabled the review action and found that the configuration to be functional
2023-02-01T18:31:19.0637848Z Requested labels: ubuntu-latest
2023-02-01T18:31:19.0637900Z Job defined at: globalbioticinteractions/ummz-ummzi/.github/workflows/review.yml@refs/heads/main
2023-02-01T18:31:19.0637923Z Waiting for a runner to pick up this job...
2023-02-01T18:31:19.3533010Z Job is waiting for a hosted runner to come online.
2023-02-01T18:31:22.7814519Z Job is about to start running on the hosted runner: Hosted Agent (hosted)
2023-02-01T18:31:24.9461400Z Current runner version: '2.301.1'
2023-02-01T18:31:24.9486537Z ##[group]Operating System
2023-02-01T18:31:24.9487046Z Ubuntu
2023-02-01T18:31:24.9487276Z 22.04.1
2023-02-01T18:31:24.9487557Z LTS
2023-02-01T18:31:24.9487912Z ##[endgroup]
2023-02-01T18:31:24.9488192Z ##[group]Runner Image
2023-02-01T18:31:24.9488525Z Image: ubuntu-22.04
2023-02-01T18:31:24.9488848Z Version: 20230122.1
2023-02-01T18:31:24.9489297Z Included Software: https://github.com/actions/runner-images/blob/ubuntu22/20230122.1/images/linux/Ubuntu2204-Readme.md
2023-02-01T18:31:24.9489941Z Image Release: https://github.com/actions/runner-images/releases/tag/ubuntu22%2F20230122.1
2023-02-01T18:31:24.9490361Z ##[endgroup]
2023-02-01T18:31:24.9490646Z ##[group]Runner Image Provisioner
2023-02-01T18:31:24.9490977Z 2.0.98.1
2023-02-01T18:31:24.9491284Z ##[endgroup]
2023-02-01T18:31:24.9492195Z ##[group]GITHUB_TOKEN Permissions
2023-02-01T18:31:24.9492807Z Actions: write
2023-02-01T18:31:24.9493065Z Checks: write
2023-02-01T18:31:24.9493527Z Contents: write
2023-02-01T18:31:24.9493841Z Deployments: write
2023-02-01T18:31:24.9494165Z Discussions: write
2023-02-01T18:31:24.9494467Z Issues: write
2023-02-01T18:31:24.9494742Z Metadata: read
2023-02-01T18:31:24.9495058Z Packages: write
2023-02-01T18:31:24.9495369Z Pages: write
2023-02-01T18:31:24.9495627Z PullRequests: write
2023-02-01T18:31:24.9495962Z RepositoryProjects: write
2023-02-01T18:31:24.9496326Z SecurityEvents: write
2023-02-01T18:31:24.9496600Z Statuses: write
2023-02-01T18:31:24.9496913Z ##[endgroup]
2023-02-01T18:31:24.9500404Z Secret source: Actions
2023-02-01T18:31:24.9500814Z Prepare workflow directory
2023-02-01T18:31:25.0313165Z Prepare all required actions
2023-02-01T18:31:25.0495416Z Getting action download info
2023-02-01T18:31:25.2724518Z Download action repository 'actions/checkout@v2' (SHA:dc323e67f16fb5f7663d20ff7941f27f5809e9b6)
2023-02-01T18:31:25.7157465Z Complete job name: build
2023-02-01T18:31:25.8058713Z ##[group]Run actions/checkout@v2
2023-02-01T18:31:25.8059108Z with:
2023-02-01T18:31:25.8059462Z repository: globalbioticinteractions/ummz-ummzi
2023-02-01T18:31:25.8060075Z token: ***
2023-02-01T18:31:25.8060462Z ssh-strict: true
2023-02-01T18:31:25.8060800Z persist-credentials: true
2023-02-01T18:31:25.8061083Z clean: true
2023-02-01T18:31:25.8061389Z fetch-depth: 1
2023-02-01T18:31:25.8061681Z lfs: false
2023-02-01T18:31:25.8061966Z submodules: false
2023-02-01T18:31:25.8062298Z set-safe-directory: true
2023-02-01T18:31:25.8062639Z ##[endgroup]
2023-02-01T18:31:26.0614033Z Syncing repository: globalbioticinteractions/ummz-ummzi
2023-02-01T18:31:26.0625026Z ##[group]Getting Git version info
2023-02-01T18:31:26.0625871Z Working directory is '/home/runner/work/ummz-ummzi/ummz-ummzi'
2023-02-01T18:31:26.0626997Z [command]/usr/bin/git version
2023-02-01T18:31:26.0671060Z git version 2.39.1
2023-02-01T18:31:26.0687108Z ##[endgroup]
2023-02-01T18:31:26.0705761Z Temporarily overriding HOME='/home/runner/work/_temp/602a14f5-23de-4a98-a5b2-1bb0d40dccc5' before making global git config changes
2023-02-01T18:31:26.0706498Z Adding repository directory to the temporary git global config as a safe directory
2023-02-01T18:31:26.0708232Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/ummz-ummzi/ummz-ummzi
2023-02-01T18:31:26.0754587Z Deleting the contents of '/home/runner/work/ummz-ummzi/ummz-ummzi'
2023-02-01T18:31:26.0761122Z ##[group]Initializing the repository
2023-02-01T18:31:26.0766784Z [command]/usr/bin/git init /home/runner/work/ummz-ummzi/ummz-ummzi
2023-02-01T18:31:26.0839755Z hint: Using 'master' as the name for the initial branch. This default branch name
2023-02-01T18:31:26.0840322Z hint: is subject to change. To configure the initial branch name to use in all
2023-02-01T18:31:26.0841060Z hint: of your new repositories, which will suppress this warning, call:
2023-02-01T18:31:26.0841541Z hint:
2023-02-01T18:31:26.0842456Z hint: git config --global init.defaultBranch <name>
2023-02-01T18:31:26.0842929Z hint:
2023-02-01T18:31:26.0843700Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2023-02-01T18:31:26.0844358Z hint: 'development'. The just-created branch can be renamed via this command:
2023-02-01T18:31:26.0844792Z hint:
2023-02-01T18:31:26.0845468Z hint: git branch -m <name>
2023-02-01T18:31:26.0850490Z Initialized empty Git repository in /home/runner/work/ummz-ummzi/ummz-ummzi/.git/
2023-02-01T18:31:26.0859355Z [command]/usr/bin/git remote add origin https://github.com/globalbioticinteractions/ummz-ummzi
2023-02-01T18:31:26.0895776Z ##[endgroup]
2023-02-01T18:31:26.0896641Z ##[group]Disabling automatic garbage collection
2023-02-01T18:31:26.0902426Z [command]/usr/bin/git config --local gc.auto 0
2023-02-01T18:31:26.0931061Z ##[endgroup]
2023-02-01T18:31:26.0931785Z ##[group]Setting up auth
2023-02-01T18:31:26.0941076Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2023-02-01T18:31:26.0973974Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2023-02-01T18:31:26.1280141Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2023-02-01T18:31:26.1308650Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2023-02-01T18:31:26.1558806Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2023-02-01T18:31:26.1583841Z ##[endgroup]
2023-02-01T18:31:26.1634857Z ##[group]Fetching the repository
2023-02-01T18:31:26.1635970Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +e5a87166a65336ccef459703b3f959c575555e0a:refs/remotes/origin/main
2023-02-01T18:31:26.4009983Z remote: Enumerating objects: 12, done.
2023-02-01T18:31:26.4011015Z remote: Counting objects: 8% (1/12)
2023-02-01T18:31:26.4012397Z remote: Counting objects: 16% (2/12)
2023-02-01T18:31:26.4013028Z remote: Counting objects: 25% (3/12)
2023-02-01T18:31:26.4013912Z remote: Counting objects: 33% (4/12)
2023-02-01T18:31:26.4014981Z remote: Counting objects: 41% (5/12)
2023-02-01T18:31:26.4077238Z remote: Counting objects: 50% (6/12)
2023-02-01T18:31:26.4078942Z remote: Counting objects: 58% (7/12)
2023-02-01T18:31:26.4079363Z remote: Counting objects: 66% (8/12)
2023-02-01T18:31:26.4081202Z remote: Counting objects: 75% (9/12)
2023-02-01T18:31:26.4081945Z remote: Counting objects: 83% (10/12)
2023-02-01T18:31:26.4082965Z remote: Counting objects: 91% (11/12)
2023-02-01T18:31:26.4083765Z remote: Counting objects: 100% (12/12)
2023-02-01T18:31:26.4084585Z remote: Counting objects: 100% (12/12), done.
2023-02-01T18:31:26.4085439Z remote: Compressing objects: 12% (1/8)
2023-02-01T18:31:26.4086192Z remote: Compressing objects: 25% (2/8)
2023-02-01T18:31:26.4087042Z remote: Compressing objects: 37% (3/8)
2023-02-01T18:31:26.4087820Z remote: Compressing objects: 50% (4/8)
2023-02-01T18:31:26.4088613Z remote: Compressing objects: 62% (5/8)
2023-02-01T18:31:26.4089397Z remote: Compressing objects: 75% (6/8)
2023-02-01T18:31:26.4090234Z remote: Compressing objects: 87% (7/8)
2023-02-01T18:31:26.4090991Z remote: Compressing objects: 100% (8/8)
2023-02-01T18:31:26.4091860Z remote: Compressing objects: 100% (8/8), done.
2023-02-01T18:31:26.4092901Z remote: Total 12 (delta 0), reused 8 (delta 0), pack-reused 0
2023-02-01T18:31:26.4156822Z From https://github.com/globalbioticinteractions/ummz-ummzi
2023-02-01T18:31:26.4157798Z * [new ref] e5a87166a65336ccef459703b3f959c575555e0a -> origin/main
2023-02-01T18:31:26.4198621Z ##[endgroup]
2023-02-01T18:31:26.4199477Z ##[group]Determining the checkout info
2023-02-01T18:31:26.4200495Z ##[endgroup]
2023-02-01T18:31:26.4201598Z ##[group]Checking out the ref
2023-02-01T18:31:26.4202493Z [command]/usr/bin/git checkout --progress --force -B main refs/remotes/origin/main
2023-02-01T18:31:26.4246888Z Switched to a new branch 'main'
2023-02-01T18:31:26.4250509Z branch 'main' set up to track 'origin/main'.
2023-02-01T18:31:26.4267930Z ##[endgroup]
2023-02-01T18:31:26.4309790Z [command]/usr/bin/git log -1 --format='%H'
2023-02-01T18:31:26.4331250Z 'e5a87166a65336ccef459703b3f959c575555e0a'
2023-02-01T18:31:26.4676282Z ##[group]Run curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh" > check-dataset.sh
2023-02-01T18:31:26.4677086Z [36;1mcurl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh" > check-dataset.sh[0m
2023-02-01T18:31:26.4735345Z shell: /usr/bin/bash -e {0}
2023-02-01T18:31:26.4735786Z ##[endgroup]
2023-02-01T18:31:26.6976286Z ##[group]Run bash check-dataset.sh "${GITHUB_REPOSITORY}"
2023-02-01T18:31:26.6976646Z [36;1mbash check-dataset.sh "${GITHUB_REPOSITORY}"[0m
2023-02-01T18:31:26.7029083Z shell: /usr/bin/bash -e {0}
2023-02-01T18:31:26.7029309Z ##[endgroup]
2023-02-01T18:31:26.7164527Z _____ _ ____ _____ _____ _
2023-02-01T18:31:26.7165249Z / ____| | | _ \_ _| | __ \ (_)
2023-02-01T18:31:26.7165565Z | | __| | ___ | |_) || | | |__) |_____ ___ _____ __
2023-02-01T18:31:26.7165814Z | | |_ | |/ _ \| _ < | | | _ // _ \ \ / / |/ _ \ \ /\ / /
2023-02-01T18:31:26.7166059Z | |__| | | (_) | |_) || |_ | | \ \ __/\ V /| | __/\ V V /
2023-02-01T18:31:26.7166308Z \_____|_|\___/|____/_____| |_| \_\___| \_/ |_|\___| \_/\_/
2023-02-01T18:31:26.7166538Z | | | ____| | |
2023-02-01T18:31:26.7166753Z | |__ _ _ | |__ | | |_ ___ _ __
2023-02-01T18:31:26.7167218Z | '_ \| | | | | __| | | __/ _ \| '_ \
2023-02-01T18:31:26.7167442Z | |_) | |_| | | |____| | || (_) | | | |
2023-02-01T18:31:26.7167662Z |_.__/ \__, | |______|_|\__\___/|_| |_|
2023-02-01T18:31:26.7167885Z __/ |
2023-02-01T18:31:26.7168099Z |___/
2023-02-01T18:31:26.7168757Z ⚠️ Disclaimer: The results in this review should be considered
2023-02-01T18:31:26.7169099Z friendly, yet naive, notes from an unsophisticated robot.
2023-02-01T18:31:26.7169444Z Please carefully review the results listed below and share issues/ideas
2023-02-01T18:31:26.7169804Z by email info at globalbioticinteractions.org or by opening an issue at
2023-02-01T18:31:26.7170213Z https://github.com/globalbioticinteractions/globalbioticinteractions/issues .
2023-02-01T18:32:05.6249956Z mlr 6.0.0
2023-02-01T18:32:05.8036341Z s3cmd version 2.3.0
2023-02-01T18:32:09.3995907Z openjdk version "11.0.17" 2022-10-18
2023-02-01T18:32:09.4004492Z OpenJDK Runtime Environment Temurin-11.0.17+8 (build 11.0.17+8)
2023-02-01T18:32:09.4005074Z OpenJDK 64-Bit Server VM Temurin-11.0.17+8 (build 11.0.17+8, mixed mode)
2023-02-01T18:32:09.4229135Z elton not found... installing from [https://github.com/globalbioticinteractions/elton/releases/download/0.12.6/elton.jar]
2023-02-01T18:32:11.6193398Z elton version 0.12.6
2023-02-01T18:32:11.6215910Z nomer.cache.dir=~/.cache/nomer
2023-02-01T18:32:11.6216762Z nomer.schema.input=[{"column":0,"type":"externalId"},{"column": 1,"type":"name"}]
2023-02-01T18:32:11.6217169Z nomer.schema.output=[{"column":0,"type":"externalId"},{"column": 1,"type":"name"}]
2023-02-01T18:32:11.6234209Z nomer not found... installing from [https://github.com/globalbioticinteractions/nomer/releases/download/0.4.9/nomer.jar]
2023-02-01T18:33:26.0658839Z nomer version 0.4.9
2023-02-01T18:33:26.0680102Z
2023-02-01T18:33:26.0680885Z Review of [local] started at [2023-02-01T18:33:26+00:00].
2023-02-01T18:34:05.8874430Z updating [local]... -\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|done.
2023-02-01T18:34:43.0350730Z -\creating review [local]... |/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\done.
2023-02-01T18:34:43.0700837Z
2023-02-01T18:34:43.0701464Z gzip: stdout: Broken pipe
2023-02-01T18:34:43.0704881Z cat: write error: Broken pipe
2023-02-01T18:35:27.0736773Z listing interactions [local]... -\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\done.
2023-02-01T18:36:18.7386652Z listing taxa [local]... -\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|done.
2023-02-01T18:36:18.9631415Z
2023-02-01T18:36:18.9631948Z gzip: stdout: Broken pipe
2023-02-01T18:36:18.9702948Z
2023-02-01T18:36:18.9703524Z --- [col] start ---
2023-02-01T18:36:18.9703813Z
2023-02-01T18:36:20.5656448Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - using local Preston data dir: [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/data]
2023-02-01T18:36:20.5670402Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/tmp/nomer15547649007572048974.gz]...
2023-02-01T18:36:23.1963121Z
2023-02-01T18:36:23.1963784Z [https://zenodo.org/recor...6286c959644d950b43d7e1b] 100.0% of 3 kB at 0.35 MB/s completed in < 1 minute
2023-02-01T18:36:24.9606788Z
2023-02-01T18:36:24.9607492Z [https://zenodo.org/recor...933e074ba96c838d98ebf4a] 100.0% of 5 kB at ? MB/s completed in < 1 minute
2023-02-01T18:36:25.9141484Z
2023-02-01T18:36:25.9141848Z [https://zenodo.org/recor...f9264fdb38ec7f379d82108] 100.0% of 6 kB at ? MB/s completed in < 1 minute
2023-02-01T18:36:27.2200921Z
2023-02-01T18:36:27.2201595Z [https://zenodo.org/recor...086541516138a400620fb5b] 100.0% of 6 kB at ? MB/s completed in < 1 minute
2023-02-01T18:36:28.2123199Z
2023-02-01T18:36:28.2123908Z [https://zenodo.org/recor...6c90381190f324c1ac143f2] 100.0% of 11 kB at 11.22 MB/s completed in < 1 minute
2023-02-01T18:36:29.6220574Z
2023-02-01T18:36:29.6221123Z [https://zenodo.org/recor...000c74e4e8fdeb937e29b1d] 100.0% of 34 kB at 16.63 MB/s completed in < 1 minute
2023-02-01T18:36:32.0849765Z
2023-02-01T18:36:32.1817119Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 14.2% of 331 kB at 0.48 MB/s ETA: < 1 minute
2023-02-01T18:36:32.2796642Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 28.7% of 331 kB at 0.48 MB/s ETA: < 1 minute
2023-02-01T18:36:32.4718415Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 43.2% of 331 kB at 0.48 MB/s ETA: < 1 minute
2023-02-01T18:36:32.5691370Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 57.7% of 331 kB at 0.39 MB/s ETA: < 1 minute
2023-02-01T18:36:32.7623783Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 72.2% of 331 kB at 0.40 MB/s ETA: < 1 minute
2023-02-01T18:36:32.8595802Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 86.7% of 331 kB at 0.36 MB/s ETA: < 1 minute
2023-02-01T18:36:32.8600523Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 100.0% of 331 kB at 0.37 MB/s ETA: < 1 minute
2023-02-01T18:36:32.8600936Z [https://zenodo.org/recor...16c6302633d644c4b6c9106] 100.0% of 331 kB at 0.37 MB/s completed in < 1 minute
2023-02-01T18:36:32.8746735Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/tmp/nomer15547649007572048974.gz] done.
2023-02-01T18:36:32.8795880Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/3916de5192d63fa8956124a172650f396b843afb11d95b6865530b13968fb87e.gz]
2023-02-01T18:36:32.8951340Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - using local Preston data dir: [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/data]
2023-02-01T18:36:32.8955928Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/tmp/nomer7655173064864600553.gz]...
2023-02-01T18:36:34.8928303Z
2023-02-01T18:36:34.8928957Z [https://zenodo.org/recor...935204311f0422aa7cd213d] 100.0% of 2 kB at ? MB/s completed in < 1 minute
2023-02-01T18:36:34.8941126Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceContentBased - caching [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/tmp/nomer7655173064864600553.gz] done.
2023-02-01T18:36:34.8950284Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/d6f27c41de517496a1afbe090fe2c31cf08c15bba44b0076b4d2590194be2cb1.gz]
2023-02-01T18:36:44.7048728Z
2023-02-01T18:36:44.7049322Z real 0m25.735s
2023-02-01T18:36:44.7049681Z user 0m23.287s
2023-02-01T18:36:44.7050242Z sys 0m0.965s
2023-02-01T18:36:44.7436432Z [col] resolved 4712 out of 6092 names.
2023-02-01T18:36:44.7461886Z [col] first 10 unresolved names include:
2023-02-01T18:36:44.7556273Z Avalon
2023-02-01T18:36:44.7556473Z Black
2023-02-01T18:36:44.7556656Z Accipiter cooperi
2023-02-01T18:36:44.7556858Z Accipitrifomres
2023-02-01T18:36:44.7557058Z Accipitriforrmes
2023-02-01T18:36:44.7557258Z Acotylopus canestrinii
2023-02-01T18:36:44.7557470Z Acotylopus pedetes
2023-02-01T18:36:44.7557689Z Adelocaulus elliptodiscus
2023-02-01T18:36:44.7557904Z Aeromychirus fimbriatus
2023-02-01T18:36:44.7558124Z Aeromychirus petinomys
2023-02-01T18:36:44.7558328Z Afrolistrophorus
2023-02-01T18:36:44.7666210Z cut: write error: Broken pipe
2023-02-01T18:36:44.7674243Z
2023-02-01T18:36:44.7679418Z --- [col] end ---
2023-02-01T18:36:44.7679562Z
2023-02-01T18:36:44.7679572Z
2023-02-01T18:36:44.7680223Z --- [ncbi] start ---
2023-02-01T18:36:44.7680355Z
2023-02-01T18:36:46.4042729Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/3916de5192d63fa8956124a172650f396b843afb11d95b6865530b13968fb87e.gz]
2023-02-01T18:36:46.4382106Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/d6f27c41de517496a1afbe090fe2c31cf08c15bba44b0076b4d2590194be2cb1.gz]
2023-02-01T18:36:54.7445464Z
2023-02-01T18:36:54.7446659Z real 0m9.978s
2023-02-01T18:36:54.7447110Z user 0m18.938s
2023-02-01T18:36:54.7447717Z sys 0m0.677s
2023-02-01T18:36:54.7980694Z [ncbi] resolved 4370 out of 5905 names.
2023-02-01T18:36:54.7981049Z [ncbi] first 10 unresolved names include:
2023-02-01T18:36:54.8129553Z Avalon
2023-02-01T18:36:54.8130057Z Black
2023-02-01T18:36:54.8130508Z
2023-02-01T18:36:54.8130716Z
2023-02-01T18:36:54.8130882Z Acanthonyssus
2023-02-01T18:36:54.8131122Z Acanthonyssus dentipes
2023-02-01T18:36:54.8131348Z Acanthonyssus proechimys
2023-02-01T18:36:54.8131553Z Accipitrifomres
2023-02-01T18:36:54.8131754Z Accipitriforrmes
2023-02-01T18:36:54.8131956Z Acidoproctus kelloggi
2023-02-01T18:36:54.8132159Z Acotylopus canestrinii
2023-02-01T18:36:54.8283421Z cut: write error: Broken pipe
2023-02-01T18:36:54.8295598Z
2023-02-01T18:36:54.8295950Z --- [ncbi] end ---
2023-02-01T18:36:54.8296094Z
2023-02-01T18:36:54.8296100Z
2023-02-01T18:36:54.8296235Z --- [discoverlife] start ---
2023-02-01T18:36:54.8296380Z
2023-02-01T18:36:56.4650785Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/3916de5192d63fa8956124a172650f396b843afb11d95b6865530b13968fb87e.gz]
2023-02-01T18:36:56.4973241Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/d6f27c41de517496a1afbe090fe2c31cf08c15bba44b0076b4d2590194be2cb1.gz]
2023-02-01T18:37:04.1384802Z
2023-02-01T18:37:04.1385376Z real 0m9.310s
2023-02-01T18:37:04.1385795Z user 0m17.910s
2023-02-01T18:37:04.1386185Z sys 0m0.503s
2023-02-01T18:37:04.1602415Z [discoverlife] resolved 259 out of 5908 names.
2023-02-01T18:37:04.1603017Z [discoverlife] first 10 unresolved names include:
2023-02-01T18:37:04.1652760Z Avalon
2023-02-01T18:37:04.1653099Z Black
2023-02-01T18:37:04.1653347Z
2023-02-01T18:37:04.1653599Z
2023-02-01T18:37:04.1654045Z Acanthonyssus
2023-02-01T18:37:04.1654337Z Acanthonyssus dentipes
2023-02-01T18:37:04.1654646Z Acanthonyssus proechimys
2023-02-01T18:37:04.1654920Z Accipiter cooperi
2023-02-01T18:37:04.1655187Z Accipitrifomres
2023-02-01T18:37:04.1655455Z Accipitriformes
2023-02-01T18:37:04.1655704Z Accipitriformes
2023-02-01T18:37:04.1717998Z cut: write error: Broken pipe
2023-02-01T18:37:04.1730266Z
2023-02-01T18:37:04.1730721Z --- [discoverlife] end ---
2023-02-01T18:37:04.1730879Z
2023-02-01T18:37:04.1730973Z
2023-02-01T18:37:04.1731181Z --- [gbif] start ---
2023-02-01T18:37:04.1731315Z
2023-02-01T18:37:05.7901400Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/3916de5192d63fa8956124a172650f396b843afb11d95b6865530b13968fb87e.gz]
2023-02-01T18:37:05.8431983Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/d6f27c41de517496a1afbe090fe2c31cf08c15bba44b0076b4d2590194be2cb1.gz]
2023-02-01T18:37:15.0150326Z
2023-02-01T18:37:15.0150743Z real 0m10.843s
2023-02-01T18:37:15.0151056Z user 0m20.500s
2023-02-01T18:37:15.0151314Z sys 0m0.664s
2023-02-01T18:37:15.0462744Z [gbif] resolved 5437 out of 6457 names.
2023-02-01T18:37:15.0463251Z [gbif] first 10 unresolved names include:
2023-02-01T18:37:15.0548127Z Avalon
2023-02-01T18:37:15.0548443Z Black
2023-02-01T18:37:15.0548718Z Accipiter cooperi
2023-02-01T18:37:15.0549016Z Accipitrifomres
2023-02-01T18:37:15.0549286Z Accipitriforrmes
2023-02-01T18:37:15.0549581Z Acotylopus canestrinii
2023-02-01T18:37:15.0549862Z Acotylopus pedetes
2023-02-01T18:37:15.0550148Z Adelocaulus elliptodiscus
2023-02-01T18:37:15.0550443Z Aeromychirus fimbriatus
2023-02-01T18:37:15.0550721Z Aeromychirus petinomys
2023-02-01T18:37:15.0551022Z Afrolistrophorus chiropodomys
2023-02-01T18:37:15.0632616Z cut: write error: Broken pipe
2023-02-01T18:37:15.0645113Z
2023-02-01T18:37:15.0645544Z --- [gbif] end ---
2023-02-01T18:37:15.0645685Z
2023-02-01T18:37:15.0645778Z
2023-02-01T18:37:15.0645979Z --- [itis] start ---
2023-02-01T18:37:15.0646110Z
2023-02-01T18:37:16.6651072Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/3916de5192d63fa8956124a172650f396b843afb11d95b6865530b13968fb87e.gz]
2023-02-01T18:37:16.7372170Z [main] INFO org.globalbioticinteractions.nomer.match.ResourceServiceReadOnly - using cached [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/non-taxon-words.txt] at [/home/runner/work/ummz-ummzi/ummz-ummzi/~/.cache/nomer/hash/sha256/b42923293cebab084517099670cf0b50ad1cce3066286c959644d950b43d7e1b/d6f27c41de517496a1afbe090fe2c31cf08c15bba44b0076b4d2590194be2cb1.gz]
2023-02-01T18:37:24.8571163Z
2023-02-01T18:37:24.8571606Z real 0m9.794s
2023-02-01T18:37:24.8572208Z user 0m18.801s
2023-02-01T18:37:24.8572436Z sys 0m0.559s
2023-02-01T18:37:24.8982895Z [itis] resolved 4388 out of 5908 names.
2023-02-01T18:37:24.8983563Z [itis] first 10 unresolved names include:
2023-02-01T18:37:24.9098757Z Avalon
2023-02-01T18:37:24.9099222Z Black
2023-02-01T18:37:24.9105797Z Accipiter cooperi
2023-02-01T18:37:24.9106218Z Accipitrifomres
2023-02-01T18:37:24.9106829Z Accipitriforrmes
2023-02-01T18:37:24.9107195Z Acidoproctus kelloggi
2023-02-01T18:37:24.9132484Z Acotylopus canestrinii
2023-02-01T18:37:24.9135034Z Acotylopus pedetes
2023-02-01T18:37:24.9135823Z Actornithophilus
2023-02-01T18:37:24.9136196Z Actornithophilus bicolor
2023-02-01T18:37:24.9136774Z Actornithophilus totani
2023-02-01T18:37:24.9257635Z cut: write error: Broken pipe
2023-02-01T18:37:24.9260596Z
2023-02-01T18:37:24.9261051Z --- [itis] end ---
2023-02-01T18:37:24.9261549Z
2023-02-01T18:37:24.9325368Z
2023-02-01T18:37:24.9327046Z gzip: stdout: Broken pipe
2023-02-01T18:37:24.9333620Z cat: write error: Broken pipe
2023-02-01T18:39:17.0710556Z listing nanopubs [local]... -\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|/-\|-\|done.
2023-02-01T18:39:17.0842527Z
2023-02-01T18:39:17.0843176Z gzip: stdout: Broken pipe
2023-02-01T18:39:17.0844887Z cat: write error: Broken pipe
2023-02-01T18:39:17.0861213Z
2023-02-01T18:39:17.0862186Z Review of [globalbioticinteractions/ummz-ummzi] included:
2023-02-01T18:39:17.1787319Z - 53462 interaction(s)
2023-02-01T18:39:17.1787906Z - 4121 note(s)
2023-02-01T18:39:17.1788208Z - 53464 info(s)
2023-02-01T18:39:17.2990089Z
2023-02-01T18:39:17.2990833Z [globalbioticinteractions/ummz-ummzi] has 4121 reviewer note(s):
2023-02-01T18:39:17.4372888Z 816 target taxon name missing
2023-02-01T18:39:17.4373341Z 750 found unsupported interaction type with name: [Locality verbatim from label]
2023-02-01T18:39:17.4373888Z 324 found unsupported interaction type with name: [Verbatim from label]
2023-02-01T18:39:17.4374328Z 164 found unsupported interaction type with name: [Detailed locality from Vert Net]
2023-02-01T18:39:17.4374755Z 155 found unsupported interaction type with name: [the locality is]
2023-02-01T18:39:17.4375148Z 126 found unsupported interaction type with name: [is]
2023-02-01T18:39:17.4375517Z 110 found unsupported interaction type with name: [Muskegon]
2023-02-01T18:39:17.4375933Z 91 found unsupported interaction type with name: [Verbatim locality]
2023-02-01T18:39:17.4376353Z 80 found unsupported interaction type with name: [Verbatim locality from label]
2023-02-01T18:39:17.4376791Z 79 found unsupported interaction type with name: [Solomon Islands Locality from Vert Net]
2023-02-01T18:39:17.4377231Z 72 found unsupported interaction type with name: [Novitates Zoologicae 20]
2023-02-01T18:39:17.4377653Z 71 found unsupported interaction type with name: [Locality from Vert Net]
2023-02-01T18:39:17.4378081Z 62 found unsupported interaction type with name: [More detailed locality from Vert Net]
2023-02-01T18:39:17.4378517Z 58 found unsupported interaction type with name: [probably as follows) Peru]
2023-02-01T18:39:17.4379033Z 52 found unsupported interaction type with name: [collection number]
2023-02-01T18:39:17.4379971Z 48 found unsupported interaction type with name: [The above locality has been transcribed from the original Specify skeletal record. The original Specify record also lists a supplemental locality as 'Verbatim locality]
2023-02-01T18:39:17.4380614Z 46 found unsupported interaction type with name: [is 'New Zealand]
2023-02-01T18:39:17.4381011Z 44 found unsupported interaction type with name: [Loyalty Islands]
2023-02-01T18:39:17.4381553Z 44 found unsupported interaction type with name: [Loyalty Islands' Locality from Vert Net]
2023-02-01T18:39:17.4381899Z 42 found unsupported interaction type with name: [PALAWAN ID]
2023-02-01T18:39:17.4382323Z 42 found unsupported interaction type with name: [Locality as listed in Vert Net]
2023-02-01T18:39:17.4395246Z 40 found unsupported interaction type with name: [Original label]
2023-02-01T18:39:17.4395672Z 39 found unsupported interaction type with name: [collection code]
2023-02-01T18:39:17.4396279Z 38 found unsupported interaction type with name: [Solomon Islands' Locality verbatim from Vert Net]
2023-02-01T18:39:17.4396727Z 38 found unsupported interaction type with name: [Osceola]
2023-02-01T18:39:17.4397284Z 36 found unsupported interaction type with name: [Oxford]
2023-02-01T18:39:17.4397679Z 30 found unsupported interaction type with name: [Fivondronana de Tolagnaro]
2023-02-01T18:39:17.4398093Z 28 found unsupported interaction type with name: [per https]
2023-02-01T18:39:17.4398480Z 24 found unsupported interaction type with name: [Verbatim locality from original Specify record]
2023-02-01T18:39:17.4398903Z 24 found unsupported interaction type with name: [Monroe]
2023-02-01T18:39:17.4399436Z 23 found unsupported interaction type with name: [-175.3833333330' The locality is listed in Vert Net as 'Tonga]
2023-02-01T18:39:17.4399916Z 21 found unsupported interaction type with name: [E. Madagascar From Specify skeletal record]
2023-02-01T18:39:17.4400343Z 20 found unsupported interaction type with name: [Freyanidae]
2023-02-01T18:39:17.4400842Z 18 found unsupported interaction type with name: [Brazil. Bull. AMNH. 57]
2023-02-01T18:39:17.4401250Z 17 found unsupported interaction type with name: [Note]
2023-02-01T18:39:17.4401638Z 16 found unsupported interaction type with name: [verbatim locality]
2023-02-01T18:39:17.4402116Z 16 found unsupported interaction type with name: [is Venezuela [no further locality] Verbatim from original Specify record]
2023-02-01T18:39:17.4402651Z 16 found unsupported interaction type with name: [L.J. (1941) Stone Age agriculture in New Guinea. Geographical Review 31 (4)]
2023-02-01T18:39:17.4403098Z 16 found unsupported interaction type with name: [Cusco]
2023-02-01T18:39:17.4403616Z 15 found unsupported interaction type with name: [The locality is listed in Vert Net as 'East Burma]
2023-02-01T18:39:17.4404047Z 15 found unsupported interaction type with name: [Original locality]
2023-02-01T18:39:17.4404436Z 14 found unsupported interaction type with name: [is Ecuador]
2023-02-01T18:39:17.4404850Z 14 found unsupported interaction type with name: [Vert Net confirms this locality as]
2023-02-01T18:39:17.4405279Z 14 found unsupported interaction type with name: [Locality verbatim from slide]
2023-02-01T18:39:17.4406260Z 14 found unsupported interaction type with name: [Bechuanaland”. The original Specify skeletal record lists the following supplemental locality data]
2023-02-01T18:39:17.4406794Z 13 found unsupported interaction type with name: [Dallas]
2023-02-01T18:39:17.4407210Z 12 found unsupported interaction type with name: [More detailed locality listed on Vert Net]
2023-02-01T18:39:17.4407697Z 12 found unsupported interaction type with name: [Locality taken from slide label. Verbatim locality from slide label]
2023-02-01T18:39:17.4408134Z 11 found unsupported interaction type with name: [Red Sea]
2023-02-01T18:39:17.4408532Z 10 found unsupported interaction type with name: [Proctophyllodidae]
2023-02-01T18:39:17.4408976Z 10 found unsupported interaction type with name: [Locality as listed on Vert Net]
2023-02-01T18:39:17.4409390Z 9 found unsupported interaction type with name: [Ethiopean]
2023-02-01T18:39:17.4409799Z 8 found unsupported interaction type with name: [leaf litter & humus [Verbatim locality]
2023-02-01T18:39:17.4410253Z 8 found unsupported interaction type with name: [Verbatim from the original Specify record]
2023-02-01T18:39:17.4410651Z 8 found unsupported interaction type with name: [No further data Verbatim locality]
2023-02-01T18:39:17.4457930Z 8 found unsupported interaction type with name: [Jalisco]
2023-02-01T18:39:17.4458341Z 8 found unsupported interaction type with name: [CUZCO]
2023-02-01T18:39:17.4458714Z 8 found unsupported interaction type with name: [A more detailed locality is listed in Vert Net]
2023-02-01T18:39:17.4459245Z 7 found unsupported interaction type with name: [Verbatim locality from label reads]
2023-02-01T18:39:17.4459997Z 7 found unsupported interaction type with name: [The locality as listed on the label is ' N. Burma (Burma EXP.)' The locality is listed in Vert Net as 'East Burma]
2023-02-01T18:39:17.4460841Z 7 found unsupported interaction type with name: [Seychelles'. The locality is expressed on Vert Net as 'Seychelles Is.]
2023-02-01T18:39:17.4461337Z 6 found unsupported interaction type with name: [[Atyeo card lists entirely different information]
2023-02-01T18:39:17.4461767Z 6 found unsupported interaction type with name: [Washtenaw]
2023-02-01T18:39:17.4462250Z 6 found unsupported interaction type with name: [Verbatim locality from slide label and Ateyo card]
2023-02-01T18:39:17.4462724Z 6 found unsupported interaction type with name: [There is a more detailed locality listed in Vert Net]
2023-02-01T18:39:17.4463289Z 6 found unsupported interaction type with name: [The slide label only identifies the locality as Paraguay Verbatim from the original Specify record]
2023-02-01T18:39:17.4464007Z 6 found unsupported interaction type with name: [S. Thailand' The locality as listed in Vert Net is 'Siam]
2023-02-01T18:39:17.4464518Z 5 found unsupported interaction type with name: [given the writing on the label. Verbatim from original Specify record]
2023-02-01T18:39:17.4464988Z 5 found unsupported interaction type with name: [Verbatim locality from Vert Net]
2023-02-01T18:39:17.4465393Z 5 found unsupported interaction type with name: [Sichuan]
2023-02-01T18:39:17.4465781Z 5 found unsupported interaction type with name: [Locality from label]
2023-02-01T18:39:17.4466192Z 5 found unsupported interaction type with name: [China. Fieldiana Zoology NS 58]
2023-02-01T18:39:17.4466634Z 4 found unsupported interaction type with name: [the locality for this specimen is]
2023-02-01T18:39:17.4467066Z 4 found unsupported interaction type with name: [nest in dead tree base[Verbatim]
2023-02-01T18:39:17.4467561Z 4 found unsupported interaction type with name: [is 'Papua New Guinea]
2023-02-01T18:39:17.4467962Z 4 found unsupported interaction type with name: [Tabora District]
2023-02-01T18:39:17.4468488Z 4 found unsupported interaction type with name: [S. America' Verbatim from original Specify record]
2023-02-01T18:39:17.4468909Z 4 found unsupported interaction type with name: [Morelos]
2023-02-01T18:39:17.4469289Z 4 found unsupported interaction type with name: [Madang Province]
2023-02-01T18:39:17.4469735Z 4 found unsupported interaction type with name: [Kubor Mts.' Verbatim locality]
2023-02-01T18:39:17.4470078Z 4 found unsupported interaction type with name: [Kubor Mts. Georef from]
2023-02-01T18:39:17.4470488Z 3 found unsupported interaction type with name: [[verbatim locality]
2023-02-01T18:39:17.4471043Z 3 found unsupported interaction type with name: [No locality data on card - verbatim locality from ZMUC catalog]
2023-02-01T18:39:17.4471477Z 3 found unsupported interaction type with name: [Denton]
2023-02-01T18:39:17.4471849Z 3 found unsupported interaction type with name: [Chippewa]
2023-02-01T18:39:17.4472258Z 3 found unsupported interaction type with name: [1 Proctophyllodidae]
2023-02-01T18:39:17.4472673Z 2 found unsupported interaction type with name: [host habitat on VertNet]
2023-02-01T18:39:17.4473066Z 2 found unsupported interaction type with name: [[Verbatim]
2023-02-01T18:39:17.4473448Z 2 found unsupported interaction type with name: [Verbatim label]
2023-02-01T18:39:17.4474370Z 2 found unsupported interaction type with name: [Verbatim from slide label]
2023-02-01T18:39:17.4474800Z 2 found unsupported interaction type with name: [Rio Chinchil[illegible] Host record]
2023-02-01T18:39:17.4475157Z 2 found unsupported interaction type with name: [Rhus]
2023-02-01T18:39:17.6796022Z 2 found unsupported interaction type with name: [Iran Locality from Vert Net]
2023-02-01T18:39:17.6796515Z 2 found unsupported interaction type with name: [Eustathiidae]
2023-02-01T18:39:17.6797049Z 2 found unsupported interaction type with name: [Coll:]
2023-02-01T18:39:17.6797680Z 2 found unsupported interaction type with name: [Cassia]
2023-02-01T18:39:17.6798158Z 2 found unsupported interaction type with name: [Aerodramus papuensis in New Guinea. Australian Field Ornithology 35]
2023-02-01T18:39:17.6798677Z 1 found unsupported interaction type with name: [does not include La Riaz. Verbatim from original Specify record]
2023-02-01T18:39:17.6799500Z 1 found unsupported interaction type with name: [and collector names are listed below-- scratched into the bottom of the slide and are mostly illegible]
2023-02-01T18:39:17.6800033Z 1 found unsupported interaction type with name: [[illegible]Beechwood Rd. Coll# F 48 From]
2023-02-01T18:39:17.6800590Z 1 found unsupported interaction type with name: [White's [crossed out] Munyawg River Australia]
2023-02-01T18:39:17.6801008Z 1 found unsupported interaction type with name: [Victoria]
2023-02-01T18:39:17.6801500Z 1 found unsupported interaction type with name: [Verify locality. From label]
2023-02-01T18:39:17.6802191Z 1 found unsupported interaction type with name: [The locality as listed on the slide label is 'S.E. New Guinea' The locality is listed in Vert Net as 'S.E. of New Guinea]
2023-02-01T18:39:17.6802683Z 1 found unsupported interaction type with name: [T]
2023-02-01T18:39:17.6803063Z 1 found unsupported interaction type with name: [Schoolcraft]
2023-02-01T18:39:17.6803518Z 1 found unsupported interaction type with name: [Rand et al. 1959. Birds from Gabon and Moyen Congo. Fieldiana (Zoology) 41(2)]
2023-02-01T18:39:17.6803977Z 1 found unsupported interaction type with name: [Northern Territory]
2023-02-01T18:39:17.6804392Z 1 found unsupported interaction type with name: [Nest SW Cell 03 em. Host]
2023-02-01T18:39:17.6804802Z 1 found unsupported interaction type with name: [Nest KS Cell 04 em. Host]
2023-02-01T18:39:17.6805200Z 1 found unsupported interaction type with name: [Nest HV Cell 05 em Host]
2023-02-01T18:39:17.6805880Z 1 found unsupported interaction type with name: [Lado Enclave now mostly in South Sudan. Georef for “Lado” north of Juba (currently abandoned). Note]
2023-02-01T18:39:17.6806379Z 1 found unsupported interaction type with name: [Collection #]
2023-02-01T18:39:17.6806767Z 1 found unsupported interaction type with name: [Coll#]
2023-02-01T18:39:17.6807134Z 1 found unsupported interaction type with name: [Biak]
2023-02-01T18:39:17.6807514Z 1 found unsupported interaction type with name: [#1076 ex]
2023-02-01T18:39:17.6807757Z
2023-02-01T18:39:17.6808076Z Download the full review report with the single-use, and expiring, file.io link at:
2023-02-01T18:39:17.8408403Z {"success":true,"status":200,"id":"bc004300-a25f-11ed-a4de-2f3b7b45eaf1","key":"Lk7WPgpTvSzO","path":"/","nodeType":"file","name":"review.tsv.gz","title":null,"description":null,"size":425624,"link":"https://file.io/Lk7WPgpTvSzO","private":false,"expires":"2023-02-15T18:39:17.778Z","downloads":0,"maxDownloads":1,"autoDelete":true,"planId":0,"screeningStatus":"pending","mimeType":"application/octet-stream","created":"2023-02-01T18:39:17.778Z","modified":"2023-02-01T18:39:17.778Z"}
2023-02-01T18:39:17.8409058Z
2023-02-01T18:39:17.8409314Z If you'd like, you can generate your own review notes by:
2023-02-01T18:39:17.8409752Z - installing GloBI's Elton via https://github.com/globalbioticinteractions/elton
2023-02-01T18:39:17.8410380Z - running "elton update globalbioticinteractions/ummz-ummzi && elton review --type note --type summary globalbioticinteractions/ummz-ummzi > review.tsv"
2023-02-01T18:39:17.8410805Z - inspecting review.tsv
2023-02-01T18:39:17.8410944Z
2023-02-01T18:39:17.8411120Z Please email info@globalbioticinteractions.org for questions/ comments.
2023-02-01T18:39:17.8421933Z ##[error]Process completed with exit code 25.
2023-02-01T18:39:17.8479414Z Post job cleanup.
2023-02-01T18:39:18.0356260Z [command]/usr/bin/git version
2023-02-01T18:39:18.0403246Z git version 2.39.1
2023-02-01T18:39:18.0453885Z Temporarily overriding HOME='/home/runner/work/_temp/c9464dc7-4349-4e2b-a36f-56388dea3e4a' before making global git config changes
2023-02-01T18:39:18.0454365Z Adding repository directory to the temporary git global config as a safe directory
2023-02-01T18:39:18.0459111Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/ummz-ummzi/ummz-ummzi
2023-02-01T18:39:18.0496987Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2023-02-01T18:39:18.0529679Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :"
2023-02-01T18:39:18.0769567Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2023-02-01T18:39:18.0794622Z http.https://github.com/.extraheader
2023-02-01T18:39:18.0795610Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2023-02-01T18:39:18.0826669Z [command]/usr/bin/git submodule foreach --recursive sh -c "git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :"
2023-02-01T18:39:18.1263565Z Cleaning up orphan processes
@jhpoelen when clicking on the review badge from globalbioticinteractions/bigbee I get a file not found error
https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/ummz-ummzi/README.txt
It seems that the review is running, but is not saving?