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globaldothealth / monkeypox

Mpox 2022 repository
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Make date of onset mpx data from ECDC available in machine readable format #103

Closed Mougk closed 2 years ago

Mougk commented 2 years ago

ECDC published a report showing countries case time series based on symptom onset dates. These are relevant data for real-time analyses of growth rates.

Proposal: make data available in machine readable format via global.health github.

Link to report here: https://monkeypoxreport.ecdc.europa.eu/

Screenshot 2022-06-24 at 11 11 48

Some helpful pointers here: https://twitter.com/uffe1974/status/1540275194903887873?s=20&t=0uZZZolGanfRFLUh7BnQMA

badrange commented 2 years ago

FYI: ECDC also makes data available as xls, csv and json here, apparently updated twice a week: https://www.ecdc.europa.eu/en/publications-data/data-monkeypox-cases-eueea

badrange commented 2 years ago

From the csv file:

DateRep,CountryExp,CountryCode,Source,ConfCases
2022-04-26,Austria,AT,EI,0
2022-04-26,Belgium,BE,TESSy,0
2022-04-26,Czechia,CZ,TESSy,0
2022-04-26,Denmark,DK,EI,0
2022-04-26,Finland,FI,EI,0
2022-04-26,France,FR,EI,0
2022-04-26,Germany,DE,EI,0
2022-04-26,Greece,EL,TESSy,0
2022-04-26,Hungary,HU,TESSy,0
2022-04-26,Iceland,IS,EI,0
2022-04-26,Ireland,IE,TESSy,0
2022-04-26,Italy,IT,TESSy,0
Mougk commented 2 years ago

Agree, would be good to also have these to estimate delays in reporting from onset --> confirmation.