Thus, create it as a proper workflow queued from analysis. Since it has specific pre and post-job demands (creating new stored/mzml files upfront, registering new files linked to the old raw files etc), you will need to link this workflow to its own job (in the system), or create a WF component for refineing, if that is feasible/enough.
Thus, create it as a proper workflow queued from analysis. Since it has specific pre and post-job demands (creating new stored/mzml files upfront, registering new files linked to the old raw files etc), you will need to link this workflow to its own job (in the system), or create a WF component for refineing, if that is feasible/enough.