Bump xarray from 2023.11.0 to 2023.12.0

[dependabot[bot]]

Bumps xarray from 2023.11.0 to 2023.12.0.

Release notes

Sourced from xarray's releases.

v2023.12.0

This release brings new hypothesis strategies for testing, significantly faster rolling aggregations as well as ffill and bfill with numbagg, a new Dataset.eval method, and improvements to reading and writing Zarr arrays (including a new "a-" mode).

Thanks to our 16 contributors:

Anderson Banihirwe, Ben Mares, Carl Andersson, Deepak Cherian, Doug Latornell, Gregorio L. Trevisan, Illviljan, Jens Hedegaard Nielsen, Justus Magin, Mathias Hauser, Max Jones, Maximilian Roos, Michael Niklas, Patrick Hoefler, Ryan Abernathey, Tom Nicholas

What's Changed

• [skip-ci] dev whats-new by @​dcherian in pydata/xarray#8467
• Consolidate _get_alpha func by @​max-sixty in pydata/xarray#8465
• Fix map_blocks docs' formatting by @​max-sixty in pydata/xarray#8464
• Use concise date format when plotting by @​Illviljan in pydata/xarray#8449
• Fix mypy tests by @​max-sixty in pydata/xarray#8476
• Allow rank to run on dask arrays by @​max-sixty in pydata/xarray#8475
• Add whatsnew for #8475 by @​max-sixty in pydata/xarray#8478
• Improve "variable not found" error message by @​max-sixty in pydata/xarray#8474
• Fix bug for categorical pandas index with categories with EA dtype by @​phofl in pydata/xarray#8481
• Use numbagg for ffill by default by @​max-sixty in pydata/xarray#8389
• Refine rolling_exp error messages by @​max-sixty in pydata/xarray#8485
• Fix Zarr region transpose by @​max-sixty in pydata/xarray#8484
• Reduce redundancy between namedarray and variable tests by @​maxrjones in pydata/xarray#8405
• Start renaming dims to dim by @​max-sixty in pydata/xarray#8487
• Raise an informative error message when object array has mixed types by @​andersy005 in pydata/xarray#4700
• Update resample time offset FutureWarning and docs by @​douglatornell in pydata/xarray#8479
• Fix minor typo in io.rst by @​maresb in pydata/xarray#8492
• Warn on repeated dimension names during construction by @​TomNicholas in pydata/xarray#8491
• Minor to_zarr optimizations by @​dcherian in pydata/xarray#8489
• Properly closes zarr groups in zarr store by @​CarlAndersson in pydata/xarray#8425
• Avoid duplicate Zarr array read by @​dcherian in pydata/xarray#8472
• Add mode='a-': Do not overwrite coordinates when appending to Zarr with append_dim by @​rabernat in pydata/xarray#8428
• Add expand_dims by @​Illviljan in pydata/xarray#8407
• Update to mypy1.7 by @​headtr1ck in pydata/xarray#8501
• change type of curvefit's p0 and bounds to mapping by @​headtr1ck in pydata/xarray#8502
• Fully deprecate .drop by @​max-sixty in pydata/xarray#8497
• Fix docstrings for combine_by_coords by @​gtrevisan in pydata/xarray#8471
• roll out the new/refreshed Xarray logo by @​andersy005 in pydata/xarray#8505
• Add extra overload for to_netcdf by @​jenshnielsen in pydata/xarray#8268
• Allow callables to .drop_vars by @​max-sixty in pydata/xarray#8511
• [pre-commit.ci] pre-commit autoupdate by @​pre-commit-ci in pydata/xarray#8517
• Fix type of .assign_coords by @​max-sixty in pydata/xarray#8495
• [skip-ci] fix RTD docs build by @​andersy005 in pydata/xarray#8519
• Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 by @​dependabot in pydata/xarray#8514
• Use numbagg for rolling methods by @​max-sixty in pydata/xarray#8493
• Hypothesis strategy for generating Variable objects by @​TomNicholas in pydata/xarray#8404
• Remove PR labeler bot by @​TomNicholas in pydata/xarray#8525
• test and fix empty xindexes repr by @​mathause in pydata/xarray#8521
• Deprecate ds.dims returning dict by @​TomNicholas in pydata/xarray#8500
• Add eval method to Dataset by @​max-sixty in pydata/xarray#7163
• explicitly skip using __array_namespace__ for numpy.ndarray by @​keewis in pydata/xarray#8526

... (truncated)

Commits

• 1fd5286 Whats-new for 2023.12.0 (#8532)
• 7c1bb8d explicitly skip using __array_namespace__ for numpy.ndarray (#8526)
• 3d6ec7e Add eval method to Dataset (#7163)
• 299abd6 Deprecate ds.dims returning dict (#8500)
• 3fc0ee5 test and fix empty xindexes repr (#8521)
• ce1af97 Remove PR labeler bot (#8525)
• ab6a255 Hypothesis strategy for generating Variable objects (#8404)
• 1f94829 Use numbagg for rolling methods (#8493)
• 704de55 Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#8514)
• b9c03be fix RTD docs build (#8519)
• Additional commits viewable in compare view

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[sonarcloud[bot]]

Quality Gate passed

Kudos, no new issues were introduced!

0 New issues
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[github-actions[bot]]

:point_left: Launch a binder notebook on branch glotaran/pyglotaran/dependabot/pip/xarray-2023.12.0

[github-actions[bot]]

Benchmark is done. Checkout the benchmark result page. Benchmark differences below 5% might be due to CI noise.

Benchmark diff v0.7.2 vs. main

``` All benchmarks: | Change | Before [1fb14bbc] | After [d41652c7] | Ratio | Benchmark (Parameter) | |----------|------------------------------|---------------------|---------|-----------------------------------------| | | 240M | 236M | 0.98 | IntegrationTwoDatasets.peakmem_optimize | | | 1.36±0.05s | 1.37±0.08s | 1.01 | IntegrationTwoDatasets.time_optimize | ```

Benchmark diff main vs. PR

``` All benchmarks: | Change | Before [d41652c7] | After [c8467f84] | Ratio | Benchmark (Parameter) | |----------|----------------------|---------------------|---------|-----------------------------------------| | | 236M | 236M | 1 | IntegrationTwoDatasets.peakmem_optimize | | | 1.37±0.08s | 1.30±0.03s | 0.95 | IntegrationTwoDatasets.time_optimize | ```

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (d41652c) 88.5% compared to head (c8467f8) 88.5%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #1412 +/- ## ===================================== Coverage 88.5% 88.5% ===================================== Files 107 107 Lines 5128 5128 Branches 962 962 ===================================== Hits 4542 4542 Misses 471 471 Partials 115 115 ```

:umbrella: View full report in Codecov by Sentry.
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[dependabot[bot]]

Superseded by #1415.