✨ Add official numpy 2 support

dependabot[bot] commented 1 month ago

Bumps numpy from 1.26.4 to 2.0.1.

Release notes

v2.0.1

NumPy 2.0.1 Release Notes

NumPy 2.0.1 is a maintenance release that fixes bugs and regressions discovered after the 2.0.0 release. NumPy 2.0.1 is the last planned release in the 2.0.x series, 2.1.0rc1 should be out shortly.

The Python versions supported by this release are 3.9-3.12.

NOTE: Do not use the GitHub generated "Source code" files listed in the "Assets", they are garbage.

Improvements

np.quantile with method closest_observation chooses nearest even order statistic

This changes the definition of nearest for border cases from the nearest odd order statistic to nearest even order statistic. The numpy implementation now matches other reference implementations.

(gh-26656)

Contributors

A total of 15 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

@vahidmech +

Alex Herbert +

Charles Harris

Giovanni Del Monte +

Leo Singer

Lysandros Nikolaou

Matti Picus

Nathan Goldbaum

Patrick J. Roddy +

Raghuveer Devulapalli

Ralf Gommers

Rostan Tabet +

Sebastian Berg

Tyler Reddy

Yannik Wicke +

Pull requests merged

A total of 24 pull requests were merged for this release.

#26711: MAINT: prepare 2.0.x for further development

#26792: TYP: fix incorrect import in ma/extras.pyi stub

#26793: DOC: Mention '1.25' legacy printing mode in set_printoptions

#26794: DOC: Remove mention of NaN and NAN aliases from constants

... (truncated)

Commits

4c9f431 Merge pull request #27000 from charris/prepare-2.0.1
0e70e00 REL: Prepare for the NumPy 2.0.1 release [wheel build]
4d10ffc Merge pull request #26995 from charris/backport-26985
764b667 BUG: Add object cast to avoid warning with limited API
9be6ad6 Merge pull request #26971 from charris/backport-26935
6d950e9 BUG: fix f2py tests to work with v2 API
89630c0 Merge pull request #26962 from charris/backport-26919
88fa840 TST: Apply test suggestion by Nathan for rlstrip fixes
a9da01e BUG,MAINT: Fix utf-8 character stripping memory access
6afbbf8 Merge pull request #26963 from charris/backport-26930
Additional commits viewable in compare view

Most Recent Ignore Conditions Applied to This Pull Request

| Dependency Name | Ignore Conditions | | --- | --- | | numpy | [>= 1.25.a, < 1.26] |

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github-actions[bot] commented 1 month ago

:point_left: Launch a binder notebook on branch glotaran/pyglotaran/dependabot/pip/numpy-2.0.1

github-actions[bot] commented 1 month ago

Benchmark is done. Checkout the benchmark result page. Benchmark differences below 5% might be due to CI noise.

Benchmark diff v0.7.2 vs. main

``` All benchmarks: | Change | Before [1fb14bbc] | After [dc92e964] | Ratio | Benchmark (Parameter) | |----------|------------------------------|---------------------|---------|-----------------------------------------| | | 237M | 237M | 1 | IntegrationTwoDatasets.peakmem_optimize | | | 1.48±0.06s | 1.47±0.04s | 1 | IntegrationTwoDatasets.time_optimize | ```

Benchmark diff main vs. PR

``` All benchmarks: | Change | Before [dc92e964] | After [04ec95fb] | Ratio | Benchmark (Parameter) | |----------|----------------------|---------------------|---------|-----------------------------------------| | | 237M | 239M | 1.01 | IntegrationTwoDatasets.peakmem_optimize | | | 1.47±0.04s | 1.45±0.1s | 0.99 | IntegrationTwoDatasets.time_optimize | ```

s-weigand commented 3 weeks ago

@dependabot rebase

dependabot[bot] commented 2 weeks ago

A newer version of numpy exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

s-weigand commented 2 weeks ago

@dependabot rebase

dependabot[bot] commented 2 weeks ago

Looks like this PR has been edited by someone other than Dependabot. That means Dependabot can't rebase it - sorry!

If you're happy for Dependabot to recreate it from scratch, overwriting any edits, you can request @dependabot recreate.