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glstott / supreme-potato

This project will focus on various NextFlow pipelines for BAU work.
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Loading MAFFT through conda leads to errors for --addfragments #1

Open glstott opened 2 years ago

glstott commented 2 years ago

I suspect this is a version issue, but manually specifying the version didn't help add in the newer feature needed for SC2 sequences. Might be clashing with the HPC setup.

For now, I'm manually loading MAFFT through the HPC module management tools. ml MAFFT in the originating batch job.

glstott commented 1 year ago

I found a fix as part of the PMeND development process. The next time I (or someone else) needs to generate hamming distances, I'll correct it in this pipeline. Furthest down the priority list right now.