Create a module for BEAST runs in nextflow. Currently, there is a human-intensive step of creating an XML with BEAUTi. Beautier allows for generation of an XML using R, but there are limitations on what specific models can be generated, and it doesn't have compatibility with PhyDyn.
Currently, my plan is to generate a simple BEAST XML, then merge with existing more complicated XML files to create these more complicated options. That'll be easier than writing additions to the beautier package.
Create a module for BEAST runs in nextflow. Currently, there is a human-intensive step of creating an XML with BEAUTi. Beautier allows for generation of an XML using R, but there are limitations on what specific models can be generated, and it doesn't have compatibility with PhyDyn.
Currently, my plan is to generate a simple BEAST XML, then merge with existing more complicated XML files to create these more complicated options. That'll be easier than writing additions to the beautier package.