Loading subsets from medical imaging files (esp. with multiple subsets)

glue-viz / glue-medical

Experimental glue plugin for medical data

BSD 3-Clause "New" or "Revised" License

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Loading subsets from medical imaging files (esp. with multiple subsets) #10

Open AnnaBeers opened 7 years ago

AnnaBeers commented 7 years ago

Develop a subset importer for Glue from medical imaging formats. Also, whether they are DICOM-SEG or Nifti files, medical imaging files can have multiple "subsets" (in Glue terminology) stored inside of them. Develop a pipeline to split out one input file into my subsets based on the contents.

astrofrog commented 7 years ago

@AndrewBeers - glue v0.11 (just released) includes the registries for the custom subset mask importers/exporters: http://glueviz.org/en/stable/whatsnew/0.11.html#subset-mask-importers-and-exporters. Would you be interested in doing a PR to add importers/exporters for DICOM and Nifti subset files?