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glycoinfo / GlycoRDF

GlycoRDF is an RDF standard for glycomics data.
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making repository RDF #2

Closed shinmachi closed 9 years ago

shinmachi commented 9 years ago

Hi Rene,

I modified glyco ontology for the making repository RDF. So, I added new class, property and individuals. New class is "Repository" class. This class is type of Glytoucan. New property is "in_glycan_repository". This property similar to "in_glycan_database". New individuals are uoxf_color and cfg_uoxf. The glySpace web service use it symbol format.

All the Best, Daisuke

ReneRanzinger commented 9 years ago

Hi,

thanks for letting me know. Just one question, why create a new predicate instead of using in_glycan_database?

All the Best,

René

From: Daisuke shinmachi notifications@github.com Sent: Friday, May 15, 2015 6:37 AM To: ReneRanzinger/GlycoRDF Subject: [GlycoRDF] making repository RDF (#2)

Hi Rene,

I modified glyco ontology for the making repository RDF. So, I added new class, property and individuals. New class is "Repository" class. This class is type of Glytoucan. New property is "in_glycan_repository". This property similar to "in_glycan_database". New individuals are uoxf_color and cfg_uoxf. The glySpace web service use it symbol format.

All the Best, Daisuke

You can view, comment on, or merge this pull request online at:

https://github.com/ReneRanzinger/GlycoRDF/pull/2

Commit Summary

File Changes

Patch Links:

Reply to this email directly or view it on GitHubhttps://github.com/ReneRanzinger/GlycoRDF/pull/2.

alternativeTime commented 9 years ago

Hi Daisuke,

I agree with Rene it would be best to use the existing perhaps:

glycan:in_glycan_database glycan:database_glytoucan

I think this is what we are all using?

Cheers,

Matthew

On Sat, May 16, 2015 at 4:11 AM, Rene Ranzinger notifications@github.com wrote:

Hi,

thanks for letting me know. Just one question, why create a new predicate instead of using in_glycan_database?

All the Best,

René

From: Daisuke shinmachi notifications@github.com Sent: Friday, May 15, 2015 6:37 AM To: ReneRanzinger/GlycoRDF Subject: [GlycoRDF] making repository RDF (#2)

Hi Rene,

I modified glyco ontology for the making repository RDF. So, I added new class, property and individuals. New class is "Repository" class. This class is type of Glytoucan. New property is "in_glycan_repository". This property similar to "in_glycan_database". New individuals are uoxf_color and cfg_uoxf. The glySpace web service use it symbol format.

All the Best, Daisuke

You can view, comment on, or merge this pull request online at:

https://github.com/ReneRanzinger/GlycoRDF/pull/2

Commit Summary

  • Add individuals; the uoxf_color and the cfg_uoxf are member of symbol format, and the glytoucan is member of glycan database.
  • Added new class; repository class
  • Modified glytoucan IRI
  • Added new data property; in_glycan_repository

File Changes

Patch Links:

Reply to this email directly or view it on GitHub< https://github.com/ReneRanzinger/GlycoRDF/pull/2>.

— Reply to this email directly or view it on GitHub https://github.com/ReneRanzinger/GlycoRDF/pull/2#issuecomment-102475390.

shinmachi commented 9 years ago

Hi Rene, Matthew,

Thank you for advices. I see. I think it is simple that is "glycan:database_glytoucan". I agree with you and I modify agein.

All the Best, Daisuke