Biomarker component issue

[DaniallMasood]

@sujeetvkulkarni In the component section for a lot of biomarkers there is no component being shown even though it has components and information in there. It seems that it is using the GlyGen structure still of it being either protein or a glycan. We have different types of biomarkers and their components are not being shown (example below) is there a way to fix that? What has to be done?

The information can just be put out into a table and not have the tabs of "glycan" or "protein" or any other entity

@seankim658

[sujeetvkulkarni]

@DaniallMasood It can be shown. We just have to come up with a strategy - All in one table with type property or different tabs etc.

[DaniallMasood]

@sujeetvkulkarni i think table with type property would be best since we have so many different types of biomarkers.

eventually panel biomarkers will have components of different entity types so this would be best.

[sujeetvkulkarni]

@DaniallMasood Ok, then we will need to have 8 columns including Type. Glycan Image will remain empty in other cases and LOINC Code will remain empty in Glycan case.

https://www.glygen.org/biomarker/AA5041-1#Components

https://www.glygen.org/biomarker/AA4761-1#Components

[DaniallMasood]

@sujeetvkulkarni maybe there is some misunderstanding but I was thinking just displaying the table withoout the tabs above. Just display the data from the json and have it like the second screenshot with the assessed_entity_type present as well where it would indicate if it is a protein,glycan, gene, etc

[sujeetvkulkarni]

@DaniallMasood I showed current columns in the screen shots and proposed a single table with 8 columns. I think you are proposing 7 columns and dont want Glycan Image in it.

[DaniallMasood]

@sujeetvkulkarni yes but we can keep 8 columns and just add in the information of assessed_entity_type which is in the json, instead of having glycan image if possible

[sujeetvkulkarni]

@DaniallMasood ok, I will add assessed_entity_type and remove Glycan Image in a single table. Total 7 columns.

[DaniallMasood]

@sujeetvkulkarni oh yes that is my fault. I was not counting correctly and missed that. Thank you and sounds good to me

[DaniallMasood]

@sujeetvkulkarni when do you think this change will be done by? Is it possible to be completed this week

[sujeetvkulkarni]

@DaniallMasood yes, I will do it and let you know.

[sujeetvkulkarni]

@DaniallMasood I have made the change. https://glygen.ccrc.uga.edu/frontend/biomarker/AA4686-16 Please have a look.