Closed ReneRanzinger closed 5 hours ago
Kate/Urnisha: Create mapping file based off of data Mike provides for misc folder.
@ubhuiyan ... any update on this?
Here are the consensus sequences we found. @sujeetvkulkarni you may want to check these with @mtiemeyer0919 to make sure they are correct:
C-Mannosylation WXXW WXXC WXXWXXW WXXWXXWXXC
O-glucosylation CXSX(P/A)C CXNTXGSFXC
O-fucosylation CXXXX(S/T)C CXX(S/T)C
@katewarner all other consensus sequences are found in https://www.ncbi.nlm.nih.gov/books/NBK579906/ except WXXWXXW (C-Mannosylation). What is the source of WXXWXXW (C-Mannosylation)?
@sujeetvkulkarni It was from this paper: https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16265
@ubhuiyan ... where is the mapping file under the misc?
@rykahsay To my understanding, Sujeet had conducted his own research on consensus sequences and has already applied them to the front end. Kate has provided the sequences we found in this ticket for Sujeet to compare with his findings. I don't think she created a file in the misc folder for this given Sujeet has already been working on this.
Would you like for this mapping to also be present within our misc folder?
@rykahsay I have provided this mapping in misc/consensus_sequon_mapping.json
. Please let me know if you'd like me to change anything.
@sujeetvkulkarni
Release specific URL for the file is: https://data.glygen.org/ln2releases/data/v-2.6.1/misc/consensus_sequon_mapping.json
After we push to prd, you can also use this URL: https://data.glygen.org/ln2releases/data/current/misc/consensus_sequon_mapping.json
@rykahsay We have referred these consensus sequences but a copy in frontend will be used to display and highlight protein sequences. Closing this ticket. Adding label informative for future reference.