Error for invalid uniprot accession should have different message.

[sujeetvkulkarni]

error message should say invalid protein accession instead of no canonical for 08697-2, mapping not done

[pkay47]

@sujeetvkulkarni Invalid accession could be due to

• syntax invalid : can be done regexp check
• correct syntax, but accession not in uniprotkb eg: P05067-33 : can be done by uniprot api call, but will slow down tool massively
• correct syntax, not belong to 13 glygen taxids : using uniprot api identify taxid of valid accession, check if it is one of glygen species, slows down the tool
• correct syntax, belongs to 13 taxdis, but not in reference proteome : can be done having list of all uniprot accessions of glygen species

A general message 'invalid glygen accession' is displayed instead of individual fine grained error messages.

[sujeetvkulkarni]

@pkay47 instead of 'invalid glygen accession' we think it should be accession is not present in GlyGen. or accession is not available in GlyGen.

[pkay47]

@jieluo321 could you please update the error message?