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QC datasets #1740

Open ReneRanzinger opened 2 weeks ago

ReneRanzinger commented 2 weeks ago

QC of all datasets generated by Robel

ubhuiyan commented 1 week ago

Proteoform Dataset QC

Resource QC By Completed (Y/N) Issue/Ticket Notes
Cellosaurus Urnisha Y No Issues
ChEBI Urnisha Y No Issues
MatrixDB Urnisha Y No Issues
Reactome Urnisha Y No Issues
Glyconnect Urnisha Y No Issues
IPTMnet Urnisha Y No Issues
MCW O-GlcNAc Urnisha Y No Issues
OMA Urnisha
O-GlcNAcAtlas Urnisha Y No Issues
Glycan Biomarker Urnisha
ubhuiyan commented 1 week ago

Protein Dataset QC

Resource QC by Completed (Y/N) Issue/Ticket Notes
Genomics England Kate Y Looks good N
Genome Alliance Kate Y Looks good N
MGI Kate Y Looks good N
Mondo Kate Y Looks good N
EBI Kate Y #1746 missing gene co-ordinates
NCBI RefSeq Kate Y No size change N
Disease Ontology Kate Y
Glycohydrolase (bovine) Kate
Glycosyltransferase (bovine) Kate
Protein Biomarker) Kate