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EBI download missing file downloads/ebi/current/all_accessions.csv #1828

Closed rykahsay closed 1 month ago

rykahsay commented 1 month ago

Current download

$ ls -ltr downloads/ebi/current/all_accessions.csv
ls: cannot access downloads/ebi/current/all_accessions.csv: No such file or directory

Old downloads

$ ls -ltr downloads/ebi/*/all_accessions.csv
-rw-r--r--. 1 rykahsay   glygen 3016906875 Mar  5  2023 downloads/ebi/2022_05/all_accessions.csv
-rwxrwxr-x. 1 jingyue.wu glygen 3075215332 May 16  2023 downloads/ebi/2023_02/all_accessions.csv
-rwxrwxr-x. 1 jeetvora   glygen 3110920232 Jul  4  2023 downloads/ebi/2023_07_11/all_accessions.csv
-rwxrwxr-x. 1 jeetvora   glygen 3155734811 Sep 17  2023 downloads/ebi/2023_10_30/all_accessions.csv
-rwxrwxr-x. 1 jeetvora   glygen 3358552385 Feb  9  2024 downloads/ebi/2024_02_19/all_accessions.csv
-rwxrwxr-x. 1 jeetvora   glygen 3358552385 Feb  9  2024 downloads/ebi/2024_02_13/all_accessions.csv
-rwxrwxr-x. 1 k.warner1  glygen 3436274832 Apr  6  2024 downloads/ebi/2024_04_08/all_accessions.csv
-rwxrwxr-x. 1 k.warner1  glygen 3623047534 Jun  3 21:04 downloads/ebi/2024_06_20/all_accessions.csv
katewarner commented 1 month ago

@jieluo321 Hi Jie, the all_accessions.csv.gzfile in the current release appears to be empty or non-existent i.e. https://ftp.ebi.ac.uk/pub/contrib/glygen/current_release/all_accessions.csv.gz .

When I click the "all_accessions.csv.gz" link on the current_release directory it should start downloading the file (as in the previous releases) but instead I get the following forbidden permission access error: image

jieluo321 commented 1 month ago

File is there, but file permission is wrong. You can the file in the directory, but you cannot download it. I changed the file permission. Now you can download.

katewarner commented 1 month ago

@rykahsay I've uploaded the latest all_accessions.csv.gz file to downloads/ebi/current/all_accessions.csv please let me know if there are any issues